similar to: Package Dependency

Greetings - Is anyone aware of an automatic code diagrammer/flow chart creator that works for the R language (either a contributed package, or external software)? I need to explain some code structure of a package I'm working on to non-R users, and would find it extremely helpful to have such a program similar to, for example, Visustin ( http://www.aivosto.com/visustin.html ). I can do it

Hi, I'm running RH9, 2.4.20-18.9. Each night, the server mounts an external FAT32 disk using firewire, and performs backups to it using rsync. Twice within the past 3 months, the backup process has resulted in machine crash (complete hang, hardware reboot needed). From /var/log/messages: Oct 22 04:02:20 yoda kernel: Filesystem panic (dev 08:21). Oct 22 04:02:20 yoda kernel: fat_free:

Dear R-devel: The Cluster administrators at KU got enthusiastic about testing R-3.2.2 with Intel MKL when I asked for some BLAS integration. Below I forward a performance report, which is encouraging, and thought you would like to know the numbers. Appears to my untrained eye there are some extraordinary speedups on Cholesky decomposition, determinants, and matrix inversion. They had

Hi Paul, We've been through this process ourselves for the Revolution R Open project. There are a number of pitfalls to avoid, but you can take a look at how we achieved it in the build scripts at: https://github.com/RevolutionAnalytics/RRO There are also some very useful notes in the R Installation guide: https://cran.r-project.org/doc/manuals/r-release/R-admin.html#BLAS Most packages do

Hello: What's the preferred way to link to package documentation from a vignette using markdown? My current draft includes "[cumsum](https://stat.ethz.ch/R-manual/R-devel/library/base/html/cumsum.html)" to link to the help page for cusum{base} and "[KFAS](https://rweb.crmda.ku.edu/cran/web/packages/KFAS/KFAS.pdf)" to link to the pdf documentation for

Hi, Duncan: On 10/18/2015 8:18 PM, Duncan Murdoch wrote: > On 18/10/2015 5:51 PM, Spencer Graves wrote: >> Hello: >> >> >> What's the preferred way to link to package documentation from a >> vignette using markdown? >> >> >> My current draft includes >>

I'm aware R-devel no longer includes zlib. This works find on up-to-date Linux systems. On the older Centos 6 cluster at KU, they have zlib tool old for R-devel. The R-devel configure fails thus: checking if zlib version >= 1.2.5... no checking whether zlib support suffices... configure: error: zlib library and headers are required In other software, I've seen this kind of thing, so

Yesterday I uploaded new rockchalk_1.8.97. Then I received email saying that I needed to confirm the submission. Here's the message. Dear Paul E. Johnson Someone has submitted the package rockchalk to CRAN. You are receiving this email to confirm the submission as the maintainer of this package. To confirm the submission to CRAN, follow or copy & paste the following link into your

I'm writing to ask if R Core would make file.exists more Windows tolerant when the argument has a trailing slash. This has been discussed by users a few times here, I know it is not a new topic. But it is not a solved problem, yet. I acknowledge that CRAN packages exist which fix this by replacing file.exists(), but it seems more elegant to me to fix the problem in R itself. R Core goes to

I learned last week that I generated a lot of PDFs and forgot to go back and embed the fonts in them. It would be very pleasant for me if pdf.options included an argument to turn on font embedding and have fonts always embedded. Always. Thanks for your time, as always. -- Paul E. Johnson http://pj.freefaculty.org Director, Center for Research Methods and Data Analysis http://crmda.ku.edu I

Last week one of our clients reported trouble with a csv file I generated with write.table. He said that columns with quotes for character variables were rejected by their data importer, which was revised to match the way Microsoft Excel uses quotation marks in character variables. I explained to them that quoted character variables are virtuous and wise, of course, but they say Microsoft Excel

On a cluster that is based on RedHat 6.2, we are updating to R-3.3.1. I have, from time to time, run into problems with various R packages and some older versions of GCC. I wish we had newer Linux in the cluster, but with 1000s of nodes running 1000s of jobs, well, they don't want a restart. Administrator suggested I try to build with the GCC that is provided with the nodes, which is

On 19/09/2017 4:10 PM, Ista Zahn wrote: > On Tue, Sep 19, 2017 at 1:04 PM, Paul Johnson <pauljohn32 at gmail.com> wrote: >> Last week one of our clients reported trouble with a csv file I >> generated with write.table. He said that columns with quotes for >> character variables were rejected by their data importer, which was >> revised to match the way Microsoft

This is for the problem I posted about last Friday. First, the happy part, a workaround: $ cd ~/R/x86_64-redhat-linux-gnu-library/3.4 $ ln -sf /usr/share/R/library/* . After that, all of the packages are found by R CMD check. R CMD check looks in the ~/R/x86_64-redhat-linux-gnu-library/3.4 folder for packages, but not in "/usr/share/R/library" (for whatever reason, I do not know

Greetings. I see a warning message while compiling OpenMPI and would appreciate it if you tell me what it means. This warning happens with any OpenMPI > 1.6.5. Even before starting a cluster, just "sessionInfo" triggers this warning. I'm pasting in the message from R-3.3.2 (this is MRO). Do the R parallel package cluster functions violate the warnings described here? >

In the rockchalk package, I want to provide functions for regression objects that are "well behaved." If an object responds to the methods that lm or glm objects can handle, like coef(), nobs(), and summary(), I want to be able to handle the same thing. It is more difficult than expected to ask a given fitted model object "do you respond to these functions: coef(), nobs(),

To extwnd on Martin 's explanation : In factor(), levels are the unique input values and labels the unique output values. So the function levels() actually displays the labels. Cheers Joris On 15 Jun 2017 17:15, "Martin Maechler" <maechler at stat.math.ethz.ch> wrote: >>>>> Paul Johnson <pauljohn32 at gmail.com> >>>>> on Wed, 14 Jun

I've got another edition of my simulation replication framework. I'm attaching 2 R files and pasting in the readme. I would especially like to know if I'm doing anything that breaks .Random.seed or other things that R's parallel uses in the environment. In case you don't want to wrestle with attachments, the same files are online in our SVN

If Emacs is not asking for starting directory, it is very likely your init file has this somewhere: (setq ess-ask-for-ess-directory nil) On Mon, Sep 11, 2017 at 3:23 PM, Enrico Schumann <es at enricoschumann.net> wrote: > On Mon, 11 Sep 2017, Christian writes: > >> Hi, >> >> I experienced a sudden change in the behavior of M-x R in not giving >> me the choice

On 18/10/2015 5:51 PM, Spencer Graves wrote: > Hello: > > > What's the preferred way to link to package documentation from a > vignette using markdown? > > > My current draft includes > "[cumsum](https://stat.ethz.ch/R-manual/R-devel/library/base/html/cumsum.html)" > to link to the help page for cusum{base} and >