Displaying 20 results from an estimated 900 matches similar to: "Build R with MKL and ICC - make check fails"
2015 Sep 02
4
Build R with MKL and ICC
After a few days of reading and headache, I finally gave a try at
building R from source with Intel MKL and ICC. Documentation and posts
on this topic are rather incomplete, sometime fantasist et do not give
much explanations about configure options.
As I am not sure if mine is correct, I would appreciate some advices and hints.
OS: Fedora 22
parallel_studio_xe_2016
Hardware : 8 Thread(s) per
2015 Sep 04
2
Build R with MKL and ICC
On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote:
> On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote:
> > After a few days of reading and headache, I finally gave a try at
> > building R from source with Intel MKL and ICC. Documentation and posts
> > on this topic are rather incomplete, sometime fantasist et do not give
> >
2015 Sep 29
2
Build R with MKL and ICC
On Wed, Sep 9, 2015 at 11:26 PM, Nathan Kurz <nate at verse.com> wrote:
>
> As a short and simple approach, I just compiled the current R release
> on Ubuntu with ICC and MKL using just this:
>
> $ tar -xzf R-3.2.2.tar.gz
> $ cd R-3.2.2
> $ CC=icc CXX=icpc AR=xiar LD=xild CFLAGS="-g -O3 -xHost" CXXFLAGS="-g
> -O3 -xHost" ./configure
2015 Sep 30
1
Build R with MKL and ICC
On Tue, Sep 29, 2015 at 8:11 PM, Nathan Kurz <nate at verse.com> wrote:
> Hi Arnaud --
>
> I'm glad it's working for you. I'm not sure I understand your final
> answer. Are you saying that the version I posted worked for you as
> given, or that you had to remove some of the other options?
I say it works perfectly when using the single dynamic library
(lmkl_rt):
2015 Sep 08
1
Build rpm package for R-MKL
On Tue, Sep 8, 2015 at 7:58 PM, Tom Callaway <tcallawa at redhat.com> wrote:
> On 09/08/2015 01:51 PM, arnaud gaboury wrote:
>> So no idea why, at this part of the process, icc is not found. Weird,
>> as building manually from source (no rpmbuild) is OK.
>
> Hm. Is icc in a normal place that is in a standard PATH (e.g. /usr/bin
> or /bin) or are you overriding PATH?
2015 Aug 22
2
Build optimized R : openblas, MKL, ATLAS
I want to build R optimized, with either MKL, OpenBLAS or ATLAS.
My OS: Fedora 22
Hardware: CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian
CPU(s): 8 Thread(s) per core: 2 Vendor ID: GenuineIntel Model name:
Intel(R) Core(TM) i7-2600K CPU @ 3.40GHz
I am a little confused when it comes to choose a method and would like
to hear your experiences. If I am right, I have 3 possibilities:
-
2015 Aug 24
3
Build optimized R : openblas, MKL, ATLAS
On Mon, Aug 24, 2015 at 11:29 AM, Bj?rn-Helge Mevik
<b.h.mevik at usit.uio.no> wrote:
> arnaud gaboury <arnaud.gaboury at gmail.com> writes:
>
>> - Intel MKL: this is part of Intel Parallel Studio and is a paid
>> software. Now, there is the MKL package distributed by
>> Revolutionanalytics, but I am not certain how this can be distributed
>> for free. Is
2015 Sep 02
0
Build R with MKL and ICC
On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote:
> After a few days of reading and headache, I finally gave a try at
> building R from source with Intel MKL and ICC. Documentation and posts
> on this topic are rather incomplete, sometime fantasist et do not give
> much explanations about configure options.
> As I am not sure if mine is
2015 Sep 08
2
Build rpm package for R-MKL
On Tue, Sep 8, 2015 at 7:36 PM, Tom Callaway <tcallawa at redhat.com> wrote:
> On 09/07/2015 06:16 AM, arnaud gaboury wrote:
>> I want to create a clean .rpm package for R built with MKL and ICC. I
>> follow Fedora instrcutions[0] to create the package. As a base, I use
>> the R-3.2.2.src.rpm.
>>
>> I am left with this error:
>>
>>
2015 Sep 07
2
Build rpm package for R-MKL
I want to create a clean .rpm package for R built with MKL and ICC. I
follow Fedora instrcutions[0] to create the package. As a base, I use
the R-3.2.2.src.rpm.
I am left with this error:
------------------------------------------
installing R info pages ...
updating '/usr/share/info/dir' ...
make[1]: Leaving directory '/home/poisonivy/rpmbuild/BUILD/R-3.2.2/doc/manual'
+ mv
2015 Sep 05
0
Build R with MKL and ICC
On Fri, Sep 4, 2015 at 5:58 PM, Martyn Plummer <plummerm at iarc.fr> wrote:
> On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote:
>> On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote:
>> > After a few days of reading and headache, I finally gave a try at
>> > building R from source with Intel MKL and ICC. Documentation
2015 Sep 07
2
Build R with MKL and ICC
On Sat, 2015-09-05 at 11:53 +0200, arnaud gaboury wrote:
> On Fri, Sep 4, 2015 at 5:58 PM, Martyn Plummer <plummerm at iarc.fr> wrote:
> > On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote:
> >> On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote:
> >> > After a few days of reading and headache, I finally gave a try at
2015 Sep 04
1
Build R with MKL and ICC
On Fri, Sep 4, 2015, 9:24 AM Bj?rn-Helge Mevik <b.h.mevik at usit.uio.no>
wrote:
arnaud gaboury <arnaud.gaboury at gmail.com> writes:
> After a few days of reading and headache, I finally gave a try at
> building R from source with Intel MKL and ICC. Documentation and posts
> on this topic are rather incomplete, sometime fantasist et do not give
> much explanations about
2015 Sep 29
0
Build R with MKL and ICC
Hi Arnaud --
I'm glad it's working for you. I'm not sure I understand your final
answer. Are you saying that the version I posted worked for you as
given, or that you had to remove some of the other options?
Perhaps you could post the full final recipe in a way that others can
copy and paste if they find this thread in the future?
Also, did you determine if the the same approach
2015 Aug 31
1
Build R with Intel MKL and compiler
I wonder if anyone has already built a Fedora package for R-MKL (did
not found entry in rpmfusion)?
I just installed parrallel-studio-xe-2016 and would like to build R
with the Intel compiler and MKL library on Fedora 22.
Shall I thus make my own rpm package to install properly R-MKL ? If
yes, I guess I can use the Fedora src.rpm package as a base and modify
the R.spce file ?
Thank you for hints
2015 Aug 24
1
Build optimized R : openblas, MKL, ATLAS
On Mon, Aug 24, 2015 at 1:42 PM, Dirk Eddelbuettel <edd at debian.org> wrote:
>
> On 24 August 2015 at 11:43, arnaud gaboury wrote:
> | On Mon, Aug 24, 2015 at 11:29 AM, Bj?rn-Helge Mevik
> | <b.h.mevik at usit.uio.no> wrote:
> | > arnaud gaboury <arnaud.gaboury at gmail.com> writes:
> | >
> | >> - Intel MKL: this is part of Intel Parallel Studio
2015 Sep 04
0
Build R with MKL and ICC
arnaud gaboury <arnaud.gaboury at gmail.com> writes:
> After a few days of reading and headache, I finally gave a try at
> building R from source with Intel MKL and ICC. Documentation and posts
> on this topic are rather incomplete, sometime fantasist et do not give
> much explanations about configure options.
> As I am not sure if mine is correct, I would appreciate some
2015 Dec 05
2
R_PROFILE_USER
In my shell environment, I have set a path to R_PROFILE_USER. The
file, Rprofile.R, is a collection of small hacks.
I want to build rstudio-server from source. Best is to $ unset
R_PROFILE_USER before. Unfortunately, this has no effect on my system.
-----------------------------------------------
poisonivy at poppy ?? ~ % R
*** Successfully loaded .Rprofile ***
Welcome back poisonivy
working
2015 Dec 05
1
R_PROFILE_USER
On Sat, Dec 5, 2015, 9:39 PM peter dalgaard <pdalgd at gmail.com> wrote:
> On 05 Dec 2015, at 18:07 , arnaud gaboury <arnaud.gaboury at gmail.com>
wrote:
>
> In my shell environment, I have set a path to R_PROFILE_USER. The
> file, Rprofile.R, is a collection of small hacks.
>
> I want to build rstudio-server from source. Best is to $ unset
> R_PROFILE_USER
2015 Sep 17
1
Optimize R: some confusion with Lapack and OpenBlas/openBlas openmp packages.
I run Fedora 22 R package. It is build with --with-lapack \
--with-blas \ --enable-R-shlib \.
As the machine will act as a server with lots of R data computing, I
try to optimize my R package.
At first, I installed parallel_studio_xe_2016 with a free one year
licence. Then, I build a package for R with Intel MKL and compiler.
This took me lots of time as it was my first .rmp build. I finally