similar to: Issues with libcurl + HTTP status codes (eg. 403, 404)

Hi Martin, Indeed it does (and I should have confirmed myself with R-patched and R-devel before posting...) Thanks, and sorry for the noise. Kevin On Tue, Aug 25, 2015, 13:11 Martin Morgan <mtmorgan at fredhutch.org> wrote: > On 08/25/2015 12:54 PM, Kevin Ushey wrote: > > Hi all, > > > > The following fails for me (on OS X, although I imagine it's the same >

In fact, this does reproduce on R-devel: > options(download.file.method = "libcurl") > options(repos = c(CRAN = "https://cran.rstudio.com/", CRANextra = + "http://www.stats.ox.ac.uk/pub/RWin")) > install.packages("lattice") ## could be any package Installing package into ?/Users/kevinushey/Library/R/3.3/library? (as ?lib? is

On 08/25/2015 12:54 PM, Kevin Ushey wrote: > Hi all, > > The following fails for me (on OS X, although I imagine it's the same > on other platforms using libcurl): > > options(download.file.method = "libcurl") > options(repos = c(CRAN = "https://cran.rstudio.com/", CRANextra = > "http://www.stats.ox.ac.uk/pub/RWin")) >

On 08/25/2015 01:30 PM, Kevin Ushey wrote: > Hi Martin, > > Indeed it does (and I should have confirmed myself with R-patched and R-devel > before posting...) actually I don't know that it does -- it addresses the symptom but I think there should be an error from libcurl on the 403 / 404 rather than from read.dcf on error page... Martin > > Thanks, and sorry for the

>>>>> "DM" == Duncan Murdoch <murdoch.duncan at gmail.com> >>>>> on Wed, 26 Aug 2015 19:07:23 -0400 writes: DM> On 26/08/2015 6:04 PM, Jeroen Ooms wrote: >> On Tue, Aug 25, 2015 at 10:33 PM, Martin Morgan <mtmorgan at fredhutch.org> wrote: >>> >>> actually I don't know that it does -- it

On Tue, Aug 25, 2015 at 10:33 PM, Martin Morgan <mtmorgan at fredhutch.org> wrote: > > actually I don't know that it does -- it addresses the symptom but I think there should be an error from libcurl on the 403 / 404 rather than from read.dcf on error page... Indeed, the only correct behavior is to turn the protocol error code into an R exception. When the server returns a status

Hi, Let me justify building R from source. While I can obtain R built for me under Ubuntu, I tend to build it from scratch as we use a NFS-shared build as well as shared R libraries for all the bioinfo staff at this company. Only one build and one set of packages to ensure uniformity across all workstations. My problem is that despite using a pretty standard build process, I am failing at the

Hello: I've been using "Rprofile.site" for several years to set the repos environment variable as follows: options(repos=c(CRAN='http://cran.cnr.berkeley.edu', CRANextra='http://www.stats.ox.ac.uk/pub/RWin') ) However, R 2.15.0 is not recognizing this. Instead, I get the following: options('repos') $repos

I currently set the Bioconductor repository in my .Rprofile using this code (which needs editing for every version number change of Bioconductor): # Choose repositories repos <- structure(c(CRAN="http://streaming.stat.iastate.edu/CRAN", CRANextra="http://www.stats.ox.ac.uk/pub/RWin",

Hi, I'm new to R. Apologies if this is a simple query, I've searched the mailing lists and docs but can't find a solution to my problem. I'm trying to make some packages available on our intranet. During development the 'intranet' is a webserver running on localhost. * When I call "install.packages" I get a mesage about not being able to access 'index

Hello, Is it possible to change the default repositories? I've already changed the list in the repositories file under etc/ this is how my repositories file under R/etc looks like: row name menu_name URL default source win.binary mac.binary CRAN CRAN @CRAN@ TRUE TRUE TRUE TRUE BioC Bioconductor http://www.bioconductor.org TRUE TRUE TRUE FALSE

Full_Name: Robert Baer Version: 2.6.1 OS: Windows XP Submission from: (NULL) (198.209.172.95) It would be wonderful if the CRAN mirror had an easy way to set a "default CRAN mirror". Current behavior is to have to choose a CRAN mirror the first time a package is installed in a session. The closest mirror site is always the same for me, and I wouldn't wish to change it unless it

Hi there I'm looking for a function to read PNG-bitmap-images from a file into R. I only found: - the pixmap-package which cannot import png or similar formats - the rimage-package which can only import lossy jpeg-images (the convertion from png to jpeg modifies the data!) Is there any possibility to read PNG-files? Thanks for any help Dominic Sydler

I have some questions and observations about these: Will these replace manually setting options(CRAN), which doesn't work in R-2.1.0? In R-2.1.0, setRepositories() looks to see if options("repos") contains a CRAN entry and will not override that CRAN entry even if the $R_HOME/etc/repositories file (which setRepositories reads from) contains a CRAN entry. Why is this? The user

Hi everyone, I've followed the instructions from R-Admin Section 6.6 for creating a local repository. I've modified my Rprofile.site file to add the local repository to my repos, but I haven't been able to successfully install my package from the repo. Here's the code that I've run. ################################## sessionInfo() getOption("repos")

Naras, Thanks. I'm a bit confused, because Rmosek does not declare Matrix as a dependency: > tools::package_dependencies("Rmosek", which = "all")[[1L]] [1] "pkgbuild" nor does it contain code needing compilation: > packageDescription("Rmosek", fields="NeedsCompilation") [1] "no" Can you explain the

Hello, I just upgraded my Ubuntu Xenial system to R 3.5.1 (from 3.4.?) by changing the sources.list entry and doing an "apt-get dist-upgrade". Everything works except loading the rpart package in R: > library(rpart) Error: package or namespace load failed for ?rpart?: package ?rpart? was installed by an R version with different internals; it needs to be reinstalled for use with

I am trying, without success, to compile a custom locale for the utf-8 character set. I have issued this command: localedef --no-archive -f UTF-8 -i /usr/share/i18n/locales/en_CA at yyyy-mmm-dd en_CA at yyyy-mmm-dd.utf8 which produces the requisite files without reporting an error but which none-the-less insists on using the iso-8859-1 charset: LC_ALL=en_CA at yyyy-mm-dd locale charmap

Hi, The following call: xyplot(incidence ~ year, melanoma, panel=panel.smooth) produces a blank plot region with an error message: Error using packet 1 plot.new has not been called yet > sessionInfo() R version 2.11.1 (2010-05-31) x86_64-pc-linux-gnu locale: [1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C LC_TIME=en_CA.UTF-8 LC_COLLATE=en_CA.UTF-8 LC_MONETARY=C

> > > > >Please remove the SO_RCVBUF and SO_SNDBUF entries. > > >Oh, that's ancient. Do you have any possibility to move to > > >"security=user"? > > The smb.conf file was inherited from HP-UX system. Ok, > > I'll remove them > > > > >Did you try "posix locking = no"? That is mostly criticial