similar to: Web apps on a R server

On Mon, Aug 24, 2015 at 11:29 AM, Bj?rn-Helge Mevik <b.h.mevik at usit.uio.no> wrote: > arnaud gaboury <arnaud.gaboury at gmail.com> writes: > >> - Intel MKL: this is part of Intel Parallel Studio and is a paid >> software. Now, there is the MKL package distributed by >> Revolutionanalytics, but I am not certain how this can be distributed >> for free. Is

I want to build R optimized, with either MKL, OpenBLAS or ATLAS. My OS: Fedora 22 Hardware: CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 8 Thread(s) per core: 2 Vendor ID: GenuineIntel Model name: Intel(R) Core(TM) i7-2600K CPU @ 3.40GHz I am a little confused when it comes to choose a method and would like to hear your experiences. If I am right, I have 3 possibilities: -

On Sat, Dec 5, 2015, 9:39 PM peter dalgaard <pdalgd at gmail.com> wrote: > On 05 Dec 2015, at 18:07 , arnaud gaboury <arnaud.gaboury at gmail.com> wrote: > > In my shell environment, I have set a path to R_PROFILE_USER. The > file, Rprofile.R, is a collection of small hacks. > > I want to build rstudio-server from source. Best is to $ unset > R_PROFILE_USER

In my shell environment, I have set a path to R_PROFILE_USER. The file, Rprofile.R, is a collection of small hacks. I want to build rstudio-server from source. Best is to $ unset R_PROFILE_USER before. Unfortunately, this has no effect on my system. ----------------------------------------------- poisonivy at poppy ?? ~ % R *** Successfully loaded .Rprofile *** Welcome back poisonivy working

The whole build goes well and success. Now, when $ make check, it fails because of the WARNING. ------------------------------- running code in 'eval-etc.R' ... OK comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ...WARNING: ignoring environment value of R_HOME 1d0 < WARNING: ignoring environment value of R_HOME Makefile.common:93: recipe for target

On Tue, Sep 8, 2015 at 7:58 PM, Tom Callaway <tcallawa at redhat.com> wrote: > On 09/08/2015 01:51 PM, arnaud gaboury wrote: >> So no idea why, at this part of the process, icc is not found. Weird, >> as building manually from source (no rpmbuild) is OK. > > Hm. Is icc in a normal place that is in a standard PATH (e.g. /usr/bin > or /bin) or are you overriding PATH?

After a few days of reading and headache, I finally gave a try at building R from source with Intel MKL and ICC. Documentation and posts on this topic are rather incomplete, sometime fantasist et do not give much explanations about configure options. As I am not sure if mine is correct, I would appreciate some advices and hints. OS: Fedora 22 parallel_studio_xe_2016 Hardware : 8 Thread(s) per

On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote: > On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote: > > After a few days of reading and headache, I finally gave a try at > > building R from source with Intel MKL and ICC. Documentation and posts > > on this topic are rather incomplete, sometime fantasist et do not give > >

On Tue, Sep 8, 2015 at 7:36 PM, Tom Callaway <tcallawa at redhat.com> wrote: > On 09/07/2015 06:16 AM, arnaud gaboury wrote: >> I want to create a clean .rpm package for R built with MKL and ICC. I >> follow Fedora instrcutions[0] to create the package. As a base, I use >> the R-3.2.2.src.rpm. >> >> I am left with this error: >> >>

I built R form source succesfully on my Fedora 22 box. No errors. I can read there is an issue with some manuals at build time when running makeinfo, especially these two: doc/manual/R-exts.texi cp doc/manual/R-intro.texi Some distro have hacks about makeinfo 5 in their build script. I wonder if some manuals are broken but couldn't see it when running make. May someone tells me more about

On Mon, Aug 24, 2015 at 1:42 PM, Dirk Eddelbuettel <edd at debian.org> wrote: > > On 24 August 2015 at 11:43, arnaud gaboury wrote: > | On Mon, Aug 24, 2015 at 11:29 AM, Bj?rn-Helge Mevik > | <b.h.mevik at usit.uio.no> wrote: > | > arnaud gaboury <arnaud.gaboury at gmail.com> writes: > | > > | >> - Intel MKL: this is part of Intel Parallel Studio

As a regular user, member of the libvirt group, I run this command to create a basic VM: virt-install --connect qemu:///system --name=test --ram 2048 --cpu host-model-only --os-variant=win7 --disk /myVM/test --boot cdrom,hd --virt-type kvm --graphics spice --controller scsi,model=virtio-scsi --cdrom=/drawer/myIso/w8.iso It returns an error : --------------------------------- Starting install...

On Tue, Sep 29, 2015 at 8:11 PM, Nathan Kurz <nate at verse.com> wrote: > Hi Arnaud -- > > I'm glad it's working for you. I'm not sure I understand your final > answer. Are you saying that the version I posted worked for you as > given, or that you had to remove some of the other options? I say it works perfectly when using the single dynamic library (lmkl_rt):

I want to create a clean .rpm package for R built with MKL and ICC. I follow Fedora instrcutions[0] to create the package. As a base, I use the R-3.2.2.src.rpm. I am left with this error: ------------------------------------------ installing R info pages ... updating '/usr/share/info/dir' ... make[1]: Leaving directory '/home/poisonivy/rpmbuild/BUILD/R-3.2.2/doc/manual' + mv

Below is the output. Thanks for the help. > Sys.getenv() BASH_FUNC_module() () { eval `/cm/local/apps/environment-modules/3.2.10/Modules/$MODULE_VERSION/bin/modulecmd bash $*` } COLUMNS 152 CPATH /cm/shared/apps/uge/8.2.1/include CVS_RSH ssh DISPLAY localhost:10.0 EDITOR

On Wed, Sep 9, 2015 at 11:26 PM, Nathan Kurz <nate at verse.com> wrote: > > As a short and simple approach, I just compiled the current R release > on Ubuntu with ICC and MKL using just this: > > $ tar -xzf R-3.2.2.tar.gz > $ cd R-3.2.2 > $ CC=icc CXX=icpc AR=xiar LD=xild CFLAGS="-g -O3 -xHost" CXXFLAGS="-g > -O3 -xHost" ./configure

I run Fedora 22 R package. It is build with --with-lapack \ --with-blas \ --enable-R-shlib \. As the machine will act as a server with lots of R data computing, I try to optimize my R package. At first, I installed parallel_studio_xe_2016 with a free one year licence. Then, I build a package for R with Intel MKL and compiler. This took me lots of time as it was my first .rmp build. I finally

I wonder if anyone has already built a Fedora package for R-MKL (did not found entry in rpmfusion)? I just installed parrallel-studio-xe-2016 and would like to build R with the Intel compiler and MKL library on Fedora 22. Shall I thus make my own rpm package to install properly R-MKL ? If yes, I guess I can use the Fedora src.rpm package as a base and modify the R.spce file ? Thank you for hints

On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote: > After a few days of reading and headache, I finally gave a try at > building R from source with Intel MKL and ICC. Documentation and posts > on this topic are rather incomplete, sometime fantasist et do not give > much explanations about configure options. > As I am not sure if mine is

Hello Everyone, After trying several ways to compile R 3.2.2 without luck, I?m reaching out for help. The ?make check? does not hanges for some reason and when trying to install a package it cannot list the download sites (see below). What could be the problem? ./configure --enable-R-shlib --enable-BLAS-shlib hostname = test uname -m = x86_64 uname -r = 2.6.32-573.7.1.el6.x86_64 uname -s =