Displaying 20 results from an estimated 3000 matches similar to: "Build optimized R : openblas, MKL, ATLAS"
2015 Aug 24
3
Build optimized R : openblas, MKL, ATLAS
On Mon, Aug 24, 2015 at 11:29 AM, Bj?rn-Helge Mevik
<b.h.mevik at usit.uio.no> wrote:
> arnaud gaboury <arnaud.gaboury at gmail.com> writes:
>
>> - Intel MKL: this is part of Intel Parallel Studio and is a paid
>> software. Now, there is the MKL package distributed by
>> Revolutionanalytics, but I am not certain how this can be distributed
>> for free. Is
2015 Sep 02
4
Build R with MKL and ICC
After a few days of reading and headache, I finally gave a try at
building R from source with Intel MKL and ICC. Documentation and posts
on this topic are rather incomplete, sometime fantasist et do not give
much explanations about configure options.
As I am not sure if mine is correct, I would appreciate some advices and hints.
OS: Fedora 22
parallel_studio_xe_2016
Hardware : 8 Thread(s) per
2015 Aug 24
1
Build optimized R : openblas, MKL, ATLAS
On Mon, Aug 24, 2015 at 1:42 PM, Dirk Eddelbuettel <edd at debian.org> wrote:
>
> On 24 August 2015 at 11:43, arnaud gaboury wrote:
> | On Mon, Aug 24, 2015 at 11:29 AM, Bj?rn-Helge Mevik
> | <b.h.mevik at usit.uio.no> wrote:
> | > arnaud gaboury <arnaud.gaboury at gmail.com> writes:
> | >
> | >> - Intel MKL: this is part of Intel Parallel Studio
2015 Aug 24
0
Build optimized R : openblas, MKL, ATLAS
On 24 August 2015 at 11:43, arnaud gaboury wrote:
| On Mon, Aug 24, 2015 at 11:29 AM, Bj?rn-Helge Mevik
| <b.h.mevik at usit.uio.no> wrote:
| > arnaud gaboury <arnaud.gaboury at gmail.com> writes:
| >
| >> - Intel MKL: this is part of Intel Parallel Studio and is a paid
| >> software. Now, there is the MKL package distributed by
| >> Revolutionanalytics, but I
2015 Sep 04
1
Build R with MKL and ICC
On Fri, Sep 4, 2015, 9:24 AM Bj?rn-Helge Mevik <b.h.mevik at usit.uio.no>
wrote:
arnaud gaboury <arnaud.gaboury at gmail.com> writes:
> After a few days of reading and headache, I finally gave a try at
> building R from source with Intel MKL and ICC. Documentation and posts
> on this topic are rather incomplete, sometime fantasist et do not give
> much explanations about
2015 Sep 07
2
Build rpm package for R-MKL
I want to create a clean .rpm package for R built with MKL and ICC. I
follow Fedora instrcutions[0] to create the package. As a base, I use
the R-3.2.2.src.rpm.
I am left with this error:
------------------------------------------
installing R info pages ...
updating '/usr/share/info/dir' ...
make[1]: Leaving directory '/home/poisonivy/rpmbuild/BUILD/R-3.2.2/doc/manual'
+ mv
2020 Jun 24
5
R 4.0.1-4.0.2 built with Intel Composer 19.0-19.1.1, error in "make check" on CentOS 7.7
Hi there,
I initially asked about this on r-help and was told this might be a better venue. I?m not really convinced from reading the posting guide, but I?ll give it a shot. It was also suggested that the R-Project doesn?t really care about building with ?non-standard? compilers, but I can?t find any evidence of that on the website (indeed, there?s some mention of successful past builds, and the
2015 Sep 04
2
Build R with MKL and ICC
On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote:
> On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote:
> > After a few days of reading and headache, I finally gave a try at
> > building R from source with Intel MKL and ICC. Documentation and posts
> > on this topic are rather incomplete, sometime fantasist et do not give
> >
2015 Sep 29
2
Build R with MKL and ICC
On Wed, Sep 9, 2015 at 11:26 PM, Nathan Kurz <nate at verse.com> wrote:
>
> As a short and simple approach, I just compiled the current R release
> on Ubuntu with ICC and MKL using just this:
>
> $ tar -xzf R-3.2.2.tar.gz
> $ cd R-3.2.2
> $ CC=icc CXX=icpc AR=xiar LD=xild CFLAGS="-g -O3 -xHost" CXXFLAGS="-g
> -O3 -xHost" ./configure
2015 Sep 30
1
Build R with MKL and ICC
On Tue, Sep 29, 2015 at 8:11 PM, Nathan Kurz <nate at verse.com> wrote:
> Hi Arnaud --
>
> I'm glad it's working for you. I'm not sure I understand your final
> answer. Are you saying that the version I posted worked for you as
> given, or that you had to remove some of the other options?
I say it works perfectly when using the single dynamic library
(lmkl_rt):
2008 May 29
2
problem building R packages on RHEL 4 Linux with Intel compilers
I would like to build R and packages with the Intel 10.1 compilers in RHEL4.
Using the flags below, I can successfully build R using a vanilla
./configure, but when I install new packages they build with gcc. My
sysadmin suggested adding the flags to ./configure as illustrated below, but
then the R build blows up with the config tail output that follows far
below. It looks like gcc is still being
2015 Sep 07
2
Build R with MKL and ICC
On Sat, 2015-09-05 at 11:53 +0200, arnaud gaboury wrote:
> On Fri, Sep 4, 2015 at 5:58 PM, Martyn Plummer <plummerm at iarc.fr> wrote:
> > On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote:
> >> On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote:
> >> > After a few days of reading and headache, I finally gave a try at
2015 Sep 08
2
Build rpm package for R-MKL
On Tue, Sep 8, 2015 at 7:36 PM, Tom Callaway <tcallawa at redhat.com> wrote:
> On 09/07/2015 06:16 AM, arnaud gaboury wrote:
>> I want to create a clean .rpm package for R built with MKL and ICC. I
>> follow Fedora instrcutions[0] to create the package. As a base, I use
>> the R-3.2.2.src.rpm.
>>
>> I am left with this error:
>>
>>
2023 Jul 18
2
Installation of R-4.3.1 with intel 2022
Note that 'intel 2022' is a bit vague. The current version is 2023.1.0,
and that has both the 'classic' (icc/icpc/ifort which it seems you used)
and new (icx/ixpx/ifx) compilers -- the former are said to be going to
be discontinued later this year. R did not know about ifx so did not
build with the new set.
The parts of the manual Tomas referred to were about the old
2015 Sep 08
1
Build rpm package for R-MKL
On Tue, Sep 8, 2015 at 7:58 PM, Tom Callaway <tcallawa at redhat.com> wrote:
> On 09/08/2015 01:51 PM, arnaud gaboury wrote:
>> So no idea why, at this part of the process, icc is not found. Weird,
>> as building manually from source (no rpmbuild) is OK.
>
> Hm. Is icc in a normal place that is in a standard PATH (e.g. /usr/bin
> or /bin) or are you overriding PATH?
2015 Sep 17
1
Optimize R: some confusion with Lapack and OpenBlas/openBlas openmp packages.
I run Fedora 22 R package. It is build with --with-lapack \
--with-blas \ --enable-R-shlib \.
As the machine will act as a server with lots of R data computing, I
try to optimize my R package.
At first, I installed parallel_studio_xe_2016 with a free one year
licence. Then, I build a package for R with Intel MKL and compiler.
This took me lots of time as it was my first .rmp build. I finally
2012 Dec 28
1
linux multi-threaded compilation is running only on one processor
Hello,
I compiled R-2.15.2 with linux intel compilers (see below).
when I execute some R code on a // 4 proc x 4 cores // server
(export MKL_NUM_THREADS = 16)
very often I have the situations where only one processor (4 cores) is
active instead of 4 (16 cores) !
do you know this fact depends on what ?
thank you !
P.S.
many functions of R are single-threaded,
is there a simple way to make them
2015 Sep 04
0
Build R with MKL and ICC
arnaud gaboury <arnaud.gaboury at gmail.com> writes:
> After a few days of reading and headache, I finally gave a try at
> building R from source with Intel MKL and ICC. Documentation and posts
> on this topic are rather incomplete, sometime fantasist et do not give
> much explanations about configure options.
> As I am not sure if mine is correct, I would appreciate some
2023 Jun 20
1
Installation of R-4.3.1 with intel 2022
Hi all,
I have the issue:
icc -std=c99 -std=gnu11 -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O3 -wd188 -ip -mp -c eval.c -o eval.o
arithmetic.c(66): warning #274: declaration is not visible outside of function
int matherr(struct exception *exc)
^
2015 Aug 31
1
Build R with Intel MKL and compiler
I wonder if anyone has already built a Fedora package for R-MKL (did
not found entry in rpmfusion)?
I just installed parrallel-studio-xe-2016 and would like to build R
with the Intel compiler and MKL library on Fedora 22.
Shall I thus make my own rpm package to install properly R-MKL ? If
yes, I guess I can use the Fedora src.rpm package as a base and modify
the R.spce file ?
Thank you for hints