similar to: capture.output() duplicates last line unless newline (R-devel bug)

The fix for PR#16481 had a side effect involving capture.output(), so this may be transient, please recheck whether the issue has disappeared in the meantime. -pd On 14 Aug 2015, at 11:09 , Henrik Bengtsson <henrik.bengtsson at ucsf.edu> wrote: > In R-devel (2015-08-12 r69024), capture.output() incorrectly > duplicates the last line unless it ends with a newline. I don't see

geDevice has been failing check for 6 weeks now with --enable-strict-barrier , bisected to: ------------------------------------------------------------------------ r69049 | murrell | 2015-08-14 00:03:12 +0100 (Fri, 14 Aug 2015) | 2 lines first hack at adding grid display list to recorded plot objects, so can add further grid drawing following a replayPlot()

Hello, The package cts on CRAN generated a note on some systems. For instance: checking compiled code ... NOTE File ?/home/ripley/R/Lib32/cts/libs/cts.so?: Found ?abort?, possibly from ?abort? (C) which can be found from the link http://www.r-project.org/nosvn/R.check/r-patched-solaris-sparc/cts-00check.html But the package uses Fortran subroutines only without any C subroutines. In

Dear R developers, I recently observed a NOTE on several MaxOS X package checks: sh: line 1: gs: command not found !!! Error: Closing Ghostscript (exit status: 127)! /usr/bin/texi2dvi: thumbpdf exited with bad status, quitting. See for details: http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/simecol-00check.html or

----- Original Message ----- > From: "G?bor Cs?rdi" <csardi.gabor at gmail.com> > To: "John McKown" <john.archie.mckown at gmail.com> > Cc: r-devel at r-project.org > Sent: Thursday, March 19, 2015 9:03:37 AM > Subject: Re: [Rd] CRAN binary, but no source > > On Thu, Mar 19, 2015 at 11:59 AM, John McKown > <john.archie.mckown at

In R 3.3.0 (also in R 2.7.2), the documentation on 'factor', in "Details" section, has this statement. 'factor(x, exclude = NULL)' applied to a factor is a no-operation unless there are unused levels: in that case, a factor with the reduced level set is returned. It is not true for a factor 'x' that has NA. In that case, if levels of 'x' doesn't

Hello: Clicking "Knit Word" in RStudio 0.99.893 with R 3.3.0, works fine with a vignette with "output: word_document". However, "R CMD build" throws the following error: $ R CMD build pkgW2vignettes * checking for file ?pkgW2vignettes/DESCRIPTION? ... OK * preparing ?pkgW2vignettes?: * checking DESCRIPTION meta-information ... OK * installing the

Hi, this is a problem that occurs in the presence of two libraries (limma, xlsx) and leads to a crash of R. The problematic code is the wrong application of sweep or the product ("*") function on an LIMMA MAList object. To my knowledge, limma does not define a "*" method for MAList objects. If only LIMMA is loaded but not package xlsx, the code does not crash but rather

Hi all. I've recently uploaded a package (bnlearn) to CRAN. It builds fine on both Linux (32 and 64 bit) and Windows, but fails on MacOSX ix86 because of C90 vs C99 issues: http://www.r-project.org/nosvn/R.check/r-patched-macosx-ix86/bnlearn-00install.html Since I've no MacOSX machine at hand, I would like to ask you: why is C99 not the default for gcc on MacOSX ix86? Is it safe to

Dear R developers, we have currently a 'mysterious' test problem with one package that successfully passed the tests on all platforms, with the only exception of Solaris x86 where obviously one of our help examples breaks the CRAN test. As we don't own such a machine I want to ask about a possibility to run a few tests on such a system: r-patched-solaris-x86 An even more recent

Hi all, For the R package bujar, the warnings below were generated on CRAN's Windows systems. The package uses some Fortran subroutines. I would appreciate any advice to eliminate the warnings. By the way, similar warnings were generated to some unrelated R packages as well: https://www.r-project.org/nosvn/R.check/r-oldrel-windows-ix86+x86_64/imputeTS-00check.html. Thanks in advance. Zhu

Dear R users, Thanks in advance. I am Deb, Statistician at NSW Department of Commerce, Sydney. I am using R 2.8.1 on Windows XP. This has reference to the package “DPpackage”. The binary version is available on Mac OS, but I am using Windows XP. May I request you to assist me in the followings: How can I prepare Windows binary of DPpackage from source? 2. Is there any possibility

Dear Hilmar Perhaps this gives an indication of why the infinite recursion happens: ## after calling `*` on ma and a matrix: > showMethods(classes=class(ma), includeDefs=TRUE, inherited = TRUE) Function: * (package base) e1="FOOCLASS", e2="matrix" (inherited from: e1="vector", e2="structure") (definition from function "Ops")

Hi, I'd like to run R-devel in a sid system that has the corresponding R packages installed (most of them). I'd be using this primarily for testing how packages that I maintain would build and check there. I know this is available via http://www.r-project.org/nosvn/R.check, but in some cases I need more control. I thought I'd have R-devel trunk live in /usr/local/src/R-devel, and

Hello, All: The CRAN checks for the "fda" package includes one error: The error most likely occurred in ... file.copy2 ... Error: unprotect_ptr: pointer not found Execution halted (http://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian/fda-00check.html) The help page for "file.copy2" includes "\examples" with everything wrapped in

I am getting the following on CRAN windows and winbuilder https://www.r-project.org/nosvn/R.check/r-devel-windows-ix86+x86_64/penaltyLearning-00check.html Apparently there is an error in re-building vignettes, but I do not have any idea what it is, because all that is listed is three dots (...). Is this a bug in R CMD check? If not, the only solution I can think of is removing the vignette

Hi, I am using caretNWS on a RHEL x86_64 system and I am getting an error message that is nearly identical to the one occuring in http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/caretNWS-00check.txt Error in socketConnection(serverHost, port = port, open = "a+b", blocking = TRUE) : unable to open connection Calls: system.time ... .local -> tryCatch -> tryCatchList

When I am loading the RGrace package I am getting the following errormessage: Loading required package: RGtk2 Loading required package: grid Loading required package: cairoDevice Error in figure() : could not find function "gladeXMLNew" Error : .onLoad failed in 'loadNamespace' for 'RGrace' Error: package/namespace load failed for 'RGrace' I am running R 2.7.1

Dear developeRs, Compilation of the latest version (0.9-5) of my actuar package fails with r-release MacOS_X ix86 on CRAN; see http://www.R-project.org/nosvn/R.check/r-release-macosx-ix86/actuar-00check.html All errors come from accented letters in comments in latin-1 encoded files (except hierarc.R which is in UTF-8, my bad). Encoding is declared as latin-1 in DESCRIPTION. The package

During installation of a package, Makevars/Makefile in src/ is processed. I've always considered the purpose of this for compiling native code. Is that it's solely purpose, or is it alright to use it also for non-code compilation purposes, e.g. building inst/ subdirectories on the fly? If not, are there other means to create non-static inst/ subdirectories during installation? The