similar to: RFC: Declaring "foo.bar" as nonS3method() ?!

>>>>> Duncan Murdoch writes: > On 12/06/2015 4:12 AM, Martin Maechler wrote: >> This is a topic ' "apparent S3 methods" note in R CMD check ' >> from R-package-devel >> https://stat.ethz.ch/pipermail/r-package-devel/2015q2/000126.html >> >> which is relevant to here because some of us have been thinking >> about extending

>>>>> Duncan Murdoch writes: > On 12/06/2015 7:16 AM, Kurt Hornik wrote: >>>>>>> Duncan Murdoch writes: >> >>> On 12/06/2015 4:12 AM, Martin Maechler wrote: >>>> This is a topic ' "apparent S3 methods" note in R CMD check ' >>>> from R-package-devel >>>>

On 12/06/2015 10:53 AM, Hadley Wickham wrote: > To me, it seems like there's actually two problems here: > > 1) Preventing all() from dispatching to all.effects() for objects of > class effects > 2) Eliminating the NOTE in R CMD check > > My impression is that 1) actually causes few problems, particularly > since people are mostly now aware of the problem and avoid

>>>>> Luke Tierney <luke-tierney at uiowa.edu> >>>>> on Fri, 12 Jun 2015 10:30:29 -0500 writes: > The notes available off the devloper page > https://developer.r-project.org/ describe some of the rationale for > the S3 method search design. One thing that has changed since then is > that all packages now have name spaces. We

And my non-cross-posted cross-posting: "Dear Martin, Thank you for addressing this issue. Introducing a nonS3method() directive in NAMESPACE seems a reasonable solution. It could replace export() for functions with "."s in their names. Best, John" On Fri, 12 Jun 2015 10:12:07 +0200 Martin Maechler <maechler at stat.math.ethz.ch> wrote: > This is a topic '

On 12/06/2015 4:12 AM, Martin Maechler wrote: > This is a topic ' "apparent S3 methods" note in R CMD check ' > from R-package-devel > https://stat.ethz.ch/pipermail/r-package-devel/2015q2/000126.html > > which is relevant to here because some of us have been thinking > about extending R because of the issue. > > John Fox, maintainer of the

On 12/06/2015 7:16 AM, Kurt Hornik wrote: >>>>>> Duncan Murdoch writes: > >> On 12/06/2015 4:12 AM, Martin Maechler wrote: >>> This is a topic ' "apparent S3 methods" note in R CMD check ' >>> from R-package-devel >>> https://stat.ethz.ch/pipermail/r-package-devel/2015q2/000126.html >>> >>> which is

To me, it seems like there's actually two problems here: 1) Preventing all() from dispatching to all.effects() for objects of class effects 2) Eliminating the NOTE in R CMD check My impression is that 1) actually causes few problems, particularly since people are mostly now aware of the problem and avoid using `.` in function names unless they're S3 methods. Fixing this issue seems like

The notes available off the devloper page https://developer.r-project.org/ describe some of the rationale for the S3 method search design. One thing that has changed since then is that all packages now have name spaces. We could change the search algorithm to skip attached package exports (and package imports and base), which would require methods defined in packages that are to be accessible

If Martin's proposal for declaring non-S3 methods in NAMESPACE is feasible, it would be very helpful. The packages we support have multiple examples of unfortunately named functions non-S3 functions, so creating a route for migrating them into compliance would be great. best, -skye On 06/12/2015 03:00 AM, r-package-devel-request at r-project.org wrote: > Message: 11 > Date: Fri,

Hello, I am not having success in a simple task. Using the effects package, I would like to add reference lines at probability values of 0.1 – 0.6 on a plot of the effects. The plot command works, but following up with an abline command produces the message “plot .new has not been called yet”, and of course the reference lines were not added. Looking through past R help lists, there was a

Dear R People: I'm using R2HTML but having a strange result. Here is the original data: resp trt block 90.3 A I 89.2 A II 98.2 A III 93.9 A IV 87.4 A V 97.9 A VI 92.5 B I 89.5 B II 90.6 B III 94.7 B IV 87.0 B V 95.8 B VI 85.5 C I 90.8 C II 89.6 C III 86.2 C IV 88.0 C V 93.4 C VI 82.5 D I 89.5 D II 85.6 D III 87.4 D IV 78.9 D V 90.7 D VI And here are the commands: > resin1.df <-

hi, i did a 2^4 factorial experiment, and i got the following result: Effect t p (computer) p -484.52494328125 -5.64590926071629 <0.0001 d -450.67095078125 -5.25142684568607 <0.0001 pd 438.80508046875 5.11316022388923 0.0001 t 351.87216640625 4.1001776078805 0.0008 pt -341.05023984375 -3.97407550262202 0.0011 dt -311.27784109375

Dear R users, I have some trouble using the allEffects() function to compute and display effect plots for a linear model. My data is quite simple, it concerns effects of 3 treatments on the tumoral volume of mice. vTum codes for the qualitative initial volume, from small to big, temps is the time in month since beginning of treatment, and S?rie codes for the batch. Data is unbalanced. >

Dear everybody! Need help with graphics. I am runnig a simple lm and then using allEffects from 'effects' package: require(effects) model<-lm(Y~A+B, data=mydataframe) I am trying to build (for each predictor - A and then B) a plot of means on Y. I was successful doing it like this - in one swoop: ml.eff<-allEffects(ml1, se=F) plot(ml.eff,ylab="Title of Y") Is it

Dear R-devel list members, Probably not an opportune time for this, given the immanent release of 2.0.0, but I was just reminded (while preparing a lecture) of a function that I find useful and that I though might be a candidate for the utils package: The function, which I call some(), behaves like head() and tail(), from which it is adapted, except that it samples from an object (e.g., rows of a

Thanks in advance for any help. I am attempting to add points to a plot using the allEffects command in the effects package. When I try to add the points I get the following error message: Error in plot.xy(xy.coords(x, y), type = type, ...) : plot.new has not been called yet Strangely, using the code I've pasted below this has worked for me in the past however figuring out what has

Alle, I am trying to install CentOS 5 on a Dual Xeon 5160 FJ RX200 S3. The RAID hardware is an internal LSI MPT 1068 SAS/RAID controller (LSI 1068SASIME-2300). I have downloaded the drivers (mptsas, mptscsih and mptbase) and created the required floppy. When I run linux dd after booting from either the DVD or Disk 1 of the CentOS distro, it says it loads mptsas, mptbase and mptscsih and

Dear All, probably a simple enough solution but don;t seem to be able to get my head around it...example based on a publicly available data set: mydata <- read.csv("https://stats.idre.ucla.edu/stat/data/binary.csv") mylogit <- glm(admit ~ gre + gpa + rank, data = mydata, family = "binomial") library(effects) plot(allEffects(mylogit) ? ?

Dear List, I find Effects package very useful, but I believe I have found a bug in allEffects function. Please consider the following code: test <- data.frame(tries= round(runif(40, 5, 300)), tra = gl(4, 10, labels = c("V", "D", "C", "L")), prop= runif(40, 0, 1)) test$success <- round(with(test, tries*prop)) test$prop <- with(test,