similar to: latex warning

>>>>> G?bor Cs?rdi <csardi.gabor at gmail.com> >>>>> on Thu, 8 Jan 2015 17:18:27 -0500 writes: > Dear all, > I am getting an R CMD check warning about the PDF manual. I am having a > hard time finding out what is wrong, here is the log of the Rd2pdf call. > The full check (and other) log is at >

Hi, The following command: R CMD Rd2pdf --no-preview --output=./tmp.pdf --title=test genefu-package.Rd run against this file: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/genefu/man/genefu-package.Rd (username: readonly; password: readonly) produces a very verbose error (see below) with R version 2.15.0 alpha (2012-03-07 r58622). The .Rd file has these lines in it: Version: \tab

On 29 May 2018 at 16:37, R P Herrold wrote: | On Tue, 29 May 2018, Dirk Eddelbuettel wrote: | | > On a CentOS 7 machine, I am at a loss with respect to an inability to run a | > full R CMD check as anything involving tex files ends in tears. | | Hi, Dirk | | Have fun at the upcoming conference at UIC | | I seem to have 56 font packages installed under CentOS 7 | locally, but then I work

Hi, Due to a change in Rd.sty a few days ago (https://github.com/wch/r-source/commit/620eb9a#diff-3bf3d821c6faae50cd6ec931f6f63296L272), the default installation of TeXLive 2009 or 2012 no longer works when building Rd to PDF. The error log is like this: =============== Converting Rd files to LaTeX ..... Creating pdf output from LaTeX ... Error in texi2dvi(file = file, pdf = TRUE, clean = clean,

On 05/29/2018 04:53 PM, Dirk Eddelbuettel wrote: > I noticed it with a local, not-public package -- but it appears to apply with > any source package. I replicated with pkgKitten straight off CRAN and after > checking that it has a six page manual there. I'm having trouble reproducing this one. In my fresh CentOS 7 VM, I can pull the pkgKitten source down, and run R CMD Rd2pdf

Tom, On 30 May 2018 at 11:34, Tom Callaway wrote: | On 05/29/2018 04:53 PM, Dirk Eddelbuettel wrote: | > I noticed it with a local, not-public package -- but it appears to apply with | > any source package. I replicated with pkgKitten straight off CRAN and after | > checking that it has a six page manual there. | | I'm having trouble reproducing this one. In my fresh CentOS 7 VM, I

Hi all I am trying to build an R package, which I have successfully done many times before, but have an error I cannot trace. I hope someone can help me. Here's is some edited output (full output below if it is useful): pdunn2 at PDunnUbuntu:~/DSdata$ R CMD build GLMsData * checking for file 'GLMsData/DESCRIPTION' ... OK * preparing 'GLMsData': * checking DESCRIPTION

On a CentOS 7 machine, I am at a loss with respect to an inability to run a full R CMD check as anything involving tex files ends in tears. We followed the README at CRAN and installed a large number of tex-live packages on this machine. But when a manual is created, we end up with what follows below. Here, I chopped some of the error messages, the key seems to be 'Insufficient extension

I want write article by russian language using Sweave. For cyrillic text LaTeX use T2A encoding \usepackage[T2A]{fontenc} But in Sweave.sty we find: \RequirePackage[T1]{fontenc} It is source of critical problem. For example Rnw file $ cat estimation.Rnw \documentclass[A4paper]{article} \usepackage[T2A]{fontenc} \usepackage[utf8]{inputenc} \usepackage[russian,english]{babel}

I am trying to build the latest version of R (3.6.2) on a CentOS system running 7.7.1908. I have been able to build previous versions of R up to and including 3.5.3 successfully. Starting with 3.6.0 the "make check" step fails with errors relating to "pdflatex" being missing. So, I installed texlive-latex (and the 100 other rpm dependencies) then tried rebuilding R.

On 4/16/2009 10:29 AM, ?????? n/a wrote: > I want write article by russian language using Sweave. For cyrillic text > LaTeX use T2A encoding > > \usepackage[T2A]{fontenc} > > But in Sweave.sty we find: > > \RequirePackage[T1]{fontenc} > > It is source of critical problem. > > For example Rnw file > > $ cat estimation.Rnw > >

Dear R?ers I?m trying to get a summary table using latex and summary in the rms package to no avail. I?m running R 2.10.1, Mac OS X snow leopard and I have the mactex 2009 distribution installed. Any obvious things I?m missing? //M options(digits=3) set.seed(173) sex <- factor(sample(c("m","f"), 500, rep=TRUE)) age <- rnorm(500, 50, 5) treatment <-

Recently, I upgraded MiKTeX to the latest versions, and since then there are problems when I try to build R and/or R packages. I tried to build R 1.9.0 beta and R 1.8.1 patched I am running Windows XP Pro, SP 1 MikTeX version is This is e-TeX, Version 3.141592-2.1 (MiKTeX 2.4) (preloaded format=latex 2004.3.27) fpTeX version is This is e-TeXk, Version 3.141592-2.1 (Web2c 7.5.2) (format=latex

dear R users, I am using sweave to generate report for my data analysis. I recently updated R ro 2.8.0, and now I have the following results when compile the the tex file generated from R. This is pdfTeXk, Version 3.141592-1.40.3 (Web2C 7.5.6) %&-line parsing enabled. entering extended mode (./Lajos.tex LaTeX2e <2005/12/01> Babel <v3.8h> and hyphenation patterns for english,

Hi, I run into a problem with "R CMD Rd2dvi" command: it gives me "File `Rd.sty' not found" error (See the output message on the bottom). I get the same error when running "RCMD check". My system is: Windows 2000, R version 2.0.1, MiKTeX version 2.4. I do have a Rd.sty file in R_HOME/share/texm directory. I looked through newsgroups for any related discussions

I'm having a problem rebuilding a package, new to me in R 2.15.0 (Linux) It hits all that contain the line \usepackage[pdftex]{graphics} and leads to the following when running R CMD check on the directory. (I do this often; a final run on the tar.gz file will happen before submission.) Since I float and resize my figures, removing the line is fatal in other ways.

Hi, I am currently in the process of installing the latest release that I cloned from git in an effort to complete an application for GSOC. I am running into an issue however with 'make' on my Ubuntu 64bit Linux version . Below is the code that make reports upon exiting with multiple errors. They seems to be related to my latex installation which aborted in error due to missing entry

Hi, I recently switched from Mac OS X (after 7 years) to Xubuntu 12.04 and I am quite happy with it so far. I first installed R from source but I was somehow missing certain things and I thus decided (after a new Xubuntu installation which I had to make due to other reasons) to install R the "Ubuntu way": ,----[ R installation: ] | 1) sudo emacs /etc/apt/sources.list | 2) add: | deb

I'm trying to build and check a new package. But keep getting the warning: * checking PDF version of manual ... WARNING LaTeX errors when creating PDF version. This typically indicates Rd problems. When I go into the package.Rcheck directory, package-manual.pdf is created. however if I do a pdflatex on package.tex I get the following: This is pdfTeX, Version 3.1415926-2.4-1.40.13

Hi! On Linux I try to produce pdf graphs with computer modern fonts so that they look nice in LaTeX documents. I run for example: ------ CM <- Type1Font( "CM", c("/usr/share/texmf-texlive/fonts/afm/public/cm-lgc/fcmr8a.afm", "/usr/share/texmf-texlive/fonts/afm/public/cm-lgc/fcmb8a.afm", "/usr/share/texmf-texlive/fonts/afm/public/cm-lgc/fcmri8a.afm",