Displaying 20 results from an estimated 4000 matches similar to: "Installing package fails at "testing if installed package can be loaded from temporary location""
2020 Apr 30
2
problem with `viridis` on Ubuntu 20.04
Il 30/04/20 03:39, Dirk Eddelbuettel ha scritto:
>
> On 30 April 2020 at 03:26, Samuele Carcagno wrote:
> | I'm not familiar with the internals of `viridisLite`, so I'm not sure
> | I'd be able to help there. I could open a bug report on the
> | `viridisLite` repo and see if the author has suggestions on how to
> | narrow down the issue.
>
> It would help if
2023 Dec 30
2
custom built R will not change BLAS/LAPACK with update-alternatives
Dear All,
I am building R from source[1], following what is done in "rules" for building Debian's R. But the R I generate, in contrast to the standard Debian's R, will not change the BLAS and LAPACK libraries it uses when I change them via "update-alternatives". I have no idea what I am doing wrong (but, somehow, I've been quite capable of making the same
2015 Sep 17
1
Optimize R: some confusion with Lapack and OpenBlas/openBlas openmp packages.
I run Fedora 22 R package. It is build with --with-lapack \
--with-blas \ --enable-R-shlib \.
As the machine will act as a server with lots of R data computing, I
try to optimize my R package.
At first, I installed parallel_studio_xe_2016 with a free one year
licence. Then, I build a package for R with Intel MKL and compiler.
This took me lots of time as it was my first .rmp build. I finally
2020 May 13
1
Sometimes commands do not terminate after upgrading to R 4.0 and Ubuntu 20.04
Thank you very much Dirk!
Le mer. 13 mai 2020 ? 14:59, Dirk Eddelbuettel <edd at debian.org> a ?crit :
>
> Salut Adrien,
>
> It appears to be a bad OpenMP and and OpenBLAS interaction you can (for
> now)
> avoid) by replacing the 'pthread' variant of OpenBLAS with the OpenMP
> version
> (see the thread for details). Doing
>
> sudo apt install
2018 Sep 23
1
libRblas.so: cannot open shared object file: No such file or directory
Thanks Dirk.? That is what I thought, and sessionInfo() returns:
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/atlas/libblas.so.3.10.3
LAPACK: /usr/lib/x86_64-linux-gnu/atlas/liblapack.so.3.10.3
locale:
?[1] LC_CTYPE=en_US.UTF-8?????? LC_NUMERIC=C
?[3] LC_TIME=en_US.UTF-8??????? LC_COLLATE=en_US.UTF-8
?[5] LC_MONETARY=en_US.UTF-8??? LC_MESSAGES=en_US.UTF-8
?[7]
2020 Jul 15
2
Openblas?
Hello,
I thought that I should try openblas when building a CRAN package
containing lots of old (twentieth century) C-code with frequent calls to
blas and lapack routines. I have the following options on my Ubuntu
20.04 machine:
Selection Path Priority Status
------------------------------------------------------------
* 0
2020 Jun 04
2
mclust package installation is preparing for lazy loading and never finishes
Hi,
After loading R 4.0.0 on Ubuntu 20.04.
R version 4.0.0 (2020-04-24) -- "Arbor Day"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()'
2008 Nov 15
2
Update to 2.8 and problem with liblapack
Hello
To update from R 2.6 to 2.8 (on Ubuntu 8.04 both) I had to install new
tcl and liblapack packages (excuse me it is in french):
> sudo apt-get install r-base-dev
> Lecture des listes de paquets... Fait
> Construction de l'arbre des d?pendances
> Lecture des informations d'?tat... Fait
> Les paquets suppl?mentaires suivants seront install?s :
>
2012 Dec 11
1
Debian packaging and openblas related crash when profiling in R
Hello R-sig-debian and (hopefully) Dirk:
On Debian wheezy, I have the R packaging that CRAN (you) provide. I
run into a little trouble while trying to fiddle with alternative
BLAS.
I know you and I went around on this last year and I think perhaps
I've found something wrong in the framework, or I've just done
something wrong.
I installed the packages openblas-base and openblas-dev, and
2020 Jul 15
2
Openblas?
On 2020-07-15 14:36, Dirk Eddelbuettel wrote:
>
> G?ran,
>
> This is not an easy email to reply to because it _contains nothing
> reproducible_.
Thanks Dirk,
Sorry about that, but my real question was (see below): "Is the problem
that openblas uses C versions of blas?" That is, do I need to change
F77_CALL(name)(...);
to
cblas_name(...);
everywhere? And if so, is
2008 Aug 12
1
Conflict between octave3.0-headers and r-base-dev
Hi,
I'm using Ubuntu Hardy i386, and the R 2.7.1 Ubuntu packages from CRAN.
The CRAN r-base-dev package depends on refblas3-dev or atlas3-base-dev,
but octave3.0-headers depends on libblas-dev. The two blas packages seem
to conflict, so r-base-dev and octave3.0-headers can't be installed
together.
Is this a known issue?
Thanks,
Gad
$ sudo apt-get install octave3.0-headers
Reading
2013 Jun 23
1
stock ubuntu raring binary R 3.0.1 and accelerated blas libraries?
dear debian-R group:
I am using the stock ubuntu binary R 3.0.1 for ubuntu raring but on
cinnamon mint olivia 15.
I read dirk's gcbd paper from a couple of years ago. it suggests that
stock blas is pretty bad compared to the four main alternatives. of
course, dirk also maintains the binaries for debian/ubuntu R, so he
probably knows the answer off hand.
I installed libatlas3-base
2020 Apr 30
0
problem with `viridis` on Ubuntu 20.04
On 30 April 2020 at 16:40, Samuele Carcagno wrote:
| after some further investigation I found out that the issue was related
| to some calls to the `solve` function in `make.rgb`, and indeed running
| `example(solve)` would hang my R session. After I changed the default
| BLAS with:
|
| sudo update-alternatives --config libblas.so.3-x86_64-linux-gnu
|
| the problem disappeared. The BLAS
2020 May 27
2
Changing the BLAS from openblas on a F32 box
On Wed, 27 May 2020 at 21:40, Gavin Simpson <ucfagls at gmail.com> wrote:
>
> Thanks I?aki, that is exactly what i was looking for, esp the last
> option which I have now configured as an alias for easy remembering.
>
> I can answer the question re USE_LOCKING=1. I think that using both
> those options is required to get thread-safety even if openblas was
> compiled for
2020 Apr 30
4
problem with `viridis` on Ubuntu 20.04
Il 30/04/20 03:14, Dirk Eddelbuettel ha scritto:
>
> On 30 April 2020 at 03:05, Samuele Carcagno wrote:
> | Il 30/04/20 01:39, Dirk Eddelbuettel ha scritto:
> | > Keep. It. Simple. And. Concise.
> | >
> | > And reproducible.
> |
> | I've attached a script that triggers the bug on my system. It's just two
> | lines, one to load `viridisLite`, and one to
2014 Jul 01
1
Error when compiling R with openblas
Hi,
I tried to compile R with openblas on a ubuntu 12.04 machine. I have to
say that I normally use the package system and that I have no experience
with compiling R.
I did the following:
./configure --enable-BLAS-shlib --enable-R-shlib LIBnn=lib
--with-blas="-L/usr/lib/openblas-base/ -lopenblas"
--enable-memory-profiling --with-x=yes
go the output:
R is now configured for
2004 May 11
1
installing mgcv (Knoppix/Debian unstable)
Just in case anyone cares or is hitting the same problem:
to install current mgcv (1.0-5) on 1.9.0 on Knoppix/Debian unstable I had
to:
# cd /usr/lib
# ln -s /usr/lib/atlas/libblas.so.3 libblas-3.so
# ln -s /usr/lib/atlas/liblapack.so.3 liblapack-3.so
Otherwise compilation couldn't find -lblas-3 or -llapack-3
(I could have gotten away with the links in /usr/lib/atlas instead of
/usr/lib,
2017 Jan 18
3
Taking determinant of a matrix of NAs results in intermittent memory corruption
Greetings; I've posted the following to R's bug tracking system (at https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17210 ) and Martin Maechler requested that I post to this list as well.
If I start R from the command line with --vanilla, then repeatedly execute the following line:
det(matrix(nrow=10,ncol=10))
... I eventually get a crash, with error:
*** Error in
2013 Dec 28
1
make check fails with default libblas
Dear All,
Summary:
========
To test some packages, I want to build R-3.1.0 (current R devel). However,
when I use the default libblas, make check fails with
running code in 'reg-BLAS.R' ...make[3]: *** [reg-BLAS.Rout] Error 1
It does not fail, however, if I use libatlas3 or libopenblas.
The same thing happens with the current R patched.
I've google around and cannot find
2016 Aug 01
2
R, OpenBLAS and OMP_NUM_THREEADS
What is the correct way to globally configure R to default to single (or
at least, << NUM_CPUS) threaded operation?
Using R 3.3.1 (both in debian unstable or using the CRAN repository for
xenial) with OpenBLAS (0.2.18) defaults to using one thread per
available CPU, which isn't ideal for machines more than a couple of CPUs.
Setting the environment (OMP_NUM_THREADS or