similar to: Sometimes commands do not terminate after upgrading to R 4.0 and Ubuntu 20.04

Thank you very much Dirk! Le mer. 13 mai 2020 ? 14:59, Dirk Eddelbuettel <edd at debian.org> a ?crit : > > Salut Adrien, > > It appears to be a bad OpenMP and and OpenBLAS interaction you can (for > now) > avoid) by replacing the 'pthread' variant of OpenBLAS with the OpenMP > version > (see the thread for details). Doing > > sudo apt install

Salut Adrien, On 13 May 2020 at 14:19, Adrien FABRE wrote: | I have upgraded R (from 3.6 to 4.0) and RStudio (from 1.1 to 1.2.5) a few | days ago, and Ubuntu from 18.04 to 20.04 yesterday. | | Since then, R sometimes never terminates when executing certain commands: | ivreg (from package AER), summary (of a logit regression) and logitmfx | (from package mfx). Sometimes these commands run fine,

Il 30/04/20 03:39, Dirk Eddelbuettel ha scritto: > > On 30 April 2020 at 03:26, Samuele Carcagno wrote: > | I'm not familiar with the internals of `viridisLite`, so I'm not sure > | I'd be able to help there. I could open a bug report on the > | `viridisLite` repo and see if the author has suggestions on how to > | narrow down the issue. > > It would help if

Dear list, What is the recommended incantation on Fedora 32 to swap out the openblas BLAS that the packaged (rpm) version of R-core installs for ATLAS? I'm running into some problems with some big models I want to fit using the mgcv package, and openblas is apparently not thread safe and is causing problems. I have the following installed: $ dnf list installed | grep ^R R-core.x86_64

Of course, even a simpler trick is to launch R as follows: LD_PRELOAD=/lib64/atlas/libsatlas.so.3 R and then the symbols in libsatlas take precedence over libopenblas. Or a mix between both alternatives, i.e., setting LD_PRELOAD=/path/to/some/link R and then change that link to point to openblas, atlas... Whatever suits you best. I?aki On Wed, 27 May 2020 at 11:00, I?aki Ucar <iucar at

Hello, the following is a part of a question asked on R-help. I realized that it is better suited for asking here. Apologies for the cross-posting! I'm on Ubuntu artful, and upgraded with 'apt'. Then ---------------------------------------------------------------- goran at M6800:~/src/R-3.4.3$ /usr/bin/R /usr/lib/R/bin/exec/R: symbol lookup error:

I didn't do the compile; is there a way to check whether that was used? If not, I'll inquire with our sysadmin and report back. In any case, my suggestion was motivated by the fact that some parts of R use OpenMP while others do not, in the hope that the former could have their OpenBLAS omelet without breaking the OpenMP eggs, so to speak. On 01/09/2018 06:41 PM, Keith O'Hara

Following 7 patches are for PCIE AER (Advanced Error Reporting) support for XEN. --------------------------------------------------------------------------- Patches 1~4 back port from Linux Kernel which enables kernel support to AER. Those patches enable DOM0 PCIE error handling capability. When a device sends a PCIE error message to the root port, it will trigger an interrupt. The irq handler

Hello R-sig-debian and (hopefully) Dirk: On Debian wheezy, I have the R packaging that CRAN (you) provide. I run into a little trouble while trying to fiddle with alternative BLAS. I know you and I went around on this last year and I think perhaps I've found something wrong in the framework, or I've just done something wrong. I installed the packages openblas-base and openblas-dev, and

He tratado de usar la opcion demo() en R studio: > require("AER") Loading required package: AER Loading required package: Formula Loading required package: lmtest Loading required package: zoo Attaching package: ''zoo'' The following object(s) are masked from ''package:base'': as.Date, as.Date.numeric Loading required package: sandwich Loading

I run Fedora 22 R package. It is build with --with-lapack \ --with-blas \ --enable-R-shlib \. As the machine will act as a server with lots of R data computing, I try to optimize my R package. At first, I installed parallel_studio_xe_2016 with a free one year licence. Then, I build a package for R with Intel MKL and compiler. This took me lots of time as it was my first .rmp build. I finally

Has anyone succeeded in getting a parallel BLAS, such as Goto's BLAS, installed on a machine running Ubuntu 11.10? I currently have the libatlas3gf-base package installed on a machine with an AMD Athlon X4 processor. I tried to install the libopenblas-base and libopenblas-dev packages but there seemed to be a glich related to having both libopenblas and libatlas3gf installed so that when I

Thanks Keith. We checked, and indeed libopenblas is not linked against libomp nor libgomp. We suspect this is because we used conda to install R and OpenBLAS. So I guess we should be barking up the conda tree instead? By the way, I also noticed on my home machine (Ubuntu), /usr/lib/libopenblas.so.0 is also not linked against those, for what that's worth. Regards, Ben On 01/10/2018 12:04

Hi folks, library(AER) data() I found the datasets of AER package. But I couldn't remove AER with: either detach("package:AER") or detach("package:AER", unload = TRUE) data() still found "car" there. What will be the correct way to remove it? TIA Besides:- I couldn't find EcDat > library(EcDat) Error in library(EcDat) : there is no package

Dear all, I am estimating a mixed-model in Ubuntu Raring (13.04¸ amd64), with the code: fm0 <- lme(rt ~ run + group * stim * cond, random=list( subj=pdSymm(~ 1 + run), subj=pdSymm(~ 0 + stim)), data=mydat1) When I check the approximate variance-covariance matrix, I get: > fm0$apVar [1] "Non-positive definite

Hi all, I used bwplot in lattice to create a 6-panel boxplot grouped by a conditioning variable (param) that displays concentration (conc) in response to treatment (trtmnt). Here is the functional part of my code followed by my three questions: library(lattice); ww<-read.csv(file="c:/Rdata/lattice_boxplot_prep.csv",header=TRUE,sep=","); attach(ww);

Hi there, On 1 December 2017 at 23:24, G?ran Brostr?m wrote: | Dirk, | | thanks for your help. At work I have (ubuntu 16.04): | | ii libblas-common 3.6.0-2ubuntu2 amd64 Dependency package for | all BLAS implementations | ii libblas-dev 3.6.0-2ubuntu2 amd64 Basic Linear Algebra | Subroutines 3, static library | ii libblas3 3.6.0-2ubuntu2 amd64 Basic Linear

Den 2017-12-01 kl. 20:24, skrev Dirk Eddelbuettel: > > On 1 December 2017 at 19:55, G?ran Brostr?m wrote: > | Hello, > | > | the following is a part of a question asked on R-help. I realized that > | it is better suited for asking here. Apologies for the cross-posting! > | > | I'm on Ubuntu artful, and upgraded with 'apt'. Then > | > |

On Wed, Jan 10, 2018 at 12:04 AM, Keith O'Hara <keith.ohara at nyu.edu> wrote: > > Check if libopenblas is linked against libomp or libgomp. > > I?d be curious to see any errors that arise when an OpenMP version of OpenBLAS is linked with R. > > Keith > The one time I tried compiling OpenBLAS for Windows 64 with USE OMP = 1, I got an error. I don't recall if it

Hello I have a network setup with one Samba PDC and two Samba BDCs separated by routers (ref http://www.cybersource.com.au/users/mikef/samba/). In this test environment the Samba servers all use the master OpenLDAP server on the PDC, but the production system will have OpenLDAP servers (using master-slave replication) on all Samba servers. I can't get the Windows XP client to change a