similar to: permission problems -xml2

On Wed, 18 Nov 2020 at 10:26, Tomas Kalibera <tomas.kalibera at gmail.com> wrote: > > On 11/17/20 9:34 PM, Bill Dunlap wrote: > > I just got a new Windows laptop (i7, 10th generation CPU), installed > > 'Windows Subsystem for Linux 2' and then installed Ubuntu 20.04 and > > used 'apt-get install' to install packages that the R build seems > > to

I just got a new Windows laptop (i7, 10th generation CPU), installed 'Windows Subsystem for Linux 2' and then installed Ubuntu 20.04 and used 'apt-get install' to install packages that the R build seems to require. In particular, I am using gcc version 9.3.0. The build went without a hitch but the tests showed that deparse(1e-16) produced "1.00000000000000e-16" instead

If you haven't done that already, you can try with the latest R-devel/R-patched. A similar issue has been reported earlier for virtualized environments where the move operation was not working properly, so R now falls back to copying. But please be aware that R is currently not being tested/supported on WSL, you would likely run into more problems, it is not the same as running natively

Jiefei, you did not commit all files into the example package - your example has things like RcppExports.cpp as well as additional flags which are not in your GH project. I suspect the issue is with the extra flags you're adding - those don't come from R. Please make sure you can replicate the issue with the GH package you created. Cheers, Simon * installing *source* package

I want to run CentOS 8.2 (2004) under Windows 10 Pro (2004) that comes with WSL2 1. Is there a list of steps anywhere, that would help me download what I need, and get CentOS 8.2 running under WSL2? 2. What would I need to download? (need direct URL - there are so many options for CentOS 8.2 , I am confused) 3. What steps would I need to take to get this running locally on my Windows 10 machine?

I'm trying to install the XML package on Ubuntu 10.10, and I keep getting a warning message the XML could not be found and had non-zero exit status. How can I fix this problem? > install.packages() Loading Tcl/Tk interface ... done --- Please select a CRAN mirror for use in this session --- Installing package(s) into ‘/home/amathew/R/i686-pc-linux-gnu-library/2.13’ (as ‘lib’ is

Oops, I think both of us forget to cite the r-devel channel. Best, Jiefei On Tue, Mar 10, 2020 at 5:13 AM Wang Jiefei <szwjf08 at gmail.com> wrote: > Thanks for your quick response, Tomas. > > Yes, this is a path issue, I think the problem is related to R, not the > Rtools make. I built an example package for reproducing the problem: > https://github.com/Jiefei-Wang/example

On Tue, May 7, 2019 at 9:05 AM Tomas Kalibera <tomas.kalibera at gmail.com> wrote: > > Thanks for the report. According to my reading, this use of "mv" is ok > and the renameat2() call which the invocation of "mv" leads to is also > ok and allowed by POSIX in this context. It could only fail with EEXIST > if the target directory (path/pkg) was not empty.

On 4/25/19 04:57, Tomas Kalibera wrote: > On 4/25/19 3:11 AM, Pages, Herve wrote: >> Hi, >> >> I was playing around with inotifywait (great tool!) to see the new >> staged installation of source packages in action. In one terminal I'm >> monitoring the create/delete/move events of the installation library >> with: >> >> ? ? inotifywait -m

I'm trying to install a gem named Fabulator on CentOS 6 CR x86_64. It's failing on libxslt-ruby. This is the error I get when trying the gem manually... ------------------------------ # gem install libxslt-ruby --no-rdoc --no-ri Building native extensions. This could take a while... ERROR: Error installing libxslt-ruby: ERROR: Failed to build gem native extension.

I'm observing that the new staged installation in R 3.6.0 can produce: mv: cannot move ?/home/alice/R/x86_64-pc-linux-gnu-library/3.6/00LOCK-codetools/00new/codetools? to ?/home/alice/R/x86_64-pc-linux-gnu-library/3.6/codetools?: File exists ERROR: moving to final location failed on some file systems. # EXAMPLE $ R --vanilla R version 3.6.0 (2019-04-26) -- "Planting of a Tree"

I?ve installed R 3.7.0 on a new laptop running macos 10.14.5 and have managed to get most of my usual packages to compile from source with a ~/.R/Makevars file that looks like this: CC=/usr/local/clang8/bin/clang CXX=/usr/local/clang8/bin/clang++ LDFLAGS=-L/usr/local/clang8/lib CPPFLAGS=-I/usr/local/clang8/include -I/opt/X11/include/freetype2 FC=/usr/local/gfortran/bin/gfortran

Hi, I was playing around with inotifywait (great tool!) to see the new staged installation of source packages in action. In one terminal I'm monitoring the create/delete/move events of the installation library with: ? inotifywait -m --timefmt '%F %T' --format '%T -- %w %e %f' -e create -e delete -e move path/to/R/library/ While in another terminal I install CRAN package

i am trying to install xml2 from CRAN, and it is throwing an error that it cannot find the libxml2 library configuration. The thing is that pkg-config seems to be set up correctly: $ echo $PKG_CONFIG_PATH :/usr/local/opt/libxml2/lib/pkgconfig:/usr/local/opt/libxml2/lib/pkgconfig $ pkg-config --cflags --libs libxml-2.0 -I/usr/local/Cellar/libxml2/2.9.7/include/libxml2

Thanks Tomas, I confirm the R Under development (unstable) (2018-04-26 r74651) version works for Rscript when the file name has a space, and no arguments are specified. C:\>"C:\Program Files\R\R-devel\bin\x64\Rscript.exe" "C:\foo bar.R" R Under development (unstable) (2018-04-26 r74651) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601)

Hello, I am relatively new to R and would like to access the document my pointer is pointing to in the following line of code. Need some help. #install.packages('xml2') library('xml2') pg1 <- read_html("www.msn.com") str(pg1) ptr <- pg1[[2]] [[alternative HTML version deleted]]

I think that this is because `[<-` dispatches on S4 methods only if the first argument is S4. ?"[<-" says: "These operators are also implicit S4 generics, but as primitives, S4 methods will be dispatched only on S4 objects ?x?." Georgi Boshnakov -----Original Message----- Message: 19 Date: Tue, 8 Sep 2020 22:04:44 -0400 From: Ben Bolker <bbolker at

On 8/22/20 9:33 PM, Jeroen Ooms wrote: > On Sat, Aug 22, 2020 at 9:10 PM Tomas Kalibera <tomas.kalibera at gmail.com> wrote: >> On 8/22/20 8:26 PM, Tomas Kalibera wrote: >>> On 8/22/20 7:58 PM, Jeroen Ooms wrote: >>>> On Sat, Aug 22, 2020 at 8:39 AM Tomas Kalibera >>>> <tomas.kalibera at gmail.com> wrote: >>>>> On 8/21/20 11:45

Hello folks, Here's is info on what system I'm working on. > sessionInfo() R version 2.13.0 (2011-04-13) Platform: i686-pc-linux-gnu (32-bit) I'm trying to install the XML package. However, I end up with the following error message. > install.packages("XML") .... checking for xml2-config... no Cannot find xml2-config ERROR: configuration failed for package ‘XML’ *

Hi Tomas, Thanks for the info about the binary builds; I did install it, however the bug still seems to be there in the current build. The workaround you suggested does work: C:\>"C:\Program Files\R\R-devel\bin\x64\Rscript.exe" "C:\foo bar.R" Fatal error: cannot open file 'C:\foo': No such file or directory C:\>"C:\Program