similar to: Problem Upgrading to R 3.5 on Ubuntu 18.04

Thanks Dirk!? The prior install and updates had been running fine for so long I forgot all about the documentation on Renviron, Startup, etc.!? Thanks.? Will changing the libPaths in Renviron.site help with the issue that the operating system doesn't seem to recognize the installation re: message that the "software is not installed" when I tried to remove it?? Also what does it

On 28 November 2018 at 12:37, Elizabeth Tighe wrote: | Somehow during the process of updating both Ubuntu and R to the latest | versions I ended up with a version of R 3.5 installed into the sudo | user's home directory with default libraries set to the sudo user home | directory as well (/home/uname/R/x86_64-pc-linux-gnu-library/3.5 rather | than usr/local/lib/R/site-library). "Hate

Anyone used jags.parallel in latest version of R2jags? Ubuntu Oneiric, just ran updates in R to get latest R2jags package which supposedly has added jags.parallel command to send chains to multiple cores ... but when I submit, I get: test <- jags.parallel(d, inits, param, model.file="rats.bug", n.chains=3, n.iter=2000) Error: could not find function

So I have two Dell power-edge machines running latest Ubuntu (13.04) with latest version of R (3.01). I installed revolution-mkl on one machine (T-410) and it works fine. On the second machine (T-620), it says the latest version of revolution-mkl is installed, but I'm getting no multi-processor functioning (R-benchmark-25.R) runs on a single processor and takes same amount of time

So, I'm submitting R 3.0.1 jobs on Ubuntu (13.04) using 'R CMD BATCH --no-save filename.R &' (have an alias set to subr='R CMD BATCH --no-save") and am having a problem of sometimes the process ending without the R commands contained in the batch file actually having finished running. We're running Bayesian models using R2jags jags.parallel and it ends during the

Hi, I have Debian Testing running on a Lenovo Thinkpad X1 Carbon (2015, 3rd gen.). I would like to have a package library independent of the installed R version. Under Ubuntu, I used to have the following line in ~/.Renviron: R_LIBS=/usr/local/R/library:/usr/lib/R/site-library This worked fine and /usr/local/R/library showed up in .libPaths(). However, under Debian (with the same ~/.Renviron),

Dear Johannes, Dear Dirk, Thanks a lot for helping. Here is the missing information. Here is how I installed R. This is basically how Martin Maechler showed me to install R under Ubuntu (in several versions so that they are also recognized by ESS). My goal is to adjust this to make it work for Debian: 1) sudo emacs /etc/apt/sources.list # then add: deb

I have not intentionally set R_LIBS_USER. I looked for an Renviron.site file but did not see it in R/etc or my home directory. The strange part is that if I print Sud.getenv I see a value for R_LIBS_USER. However, this directory is not showing under libPaths. I though .libPaths should contain R_LIBS_USER. I also noticed that R related variables are not in the system or user variables because I

Our lab has a lot of different unix boxes, with different hardware, and I'm assuming (perhaps wrongly) that by setting a per-user package installation directory, the packages will only work on one type of hardware. Our systems are all set up to share the same home directory (and, thus, the same .Renviron file) -- so, is there a way to set, in the .Renviron file, per-computer or

Hi all, I added the following line on the "Renviron.site" file: R_LIBS=C:\Program Files (x86)\R\library And when I start R and run: .libPaths() I don't see this path. On windows XP it worked for me. I am now using windoes 7 (64 bit) with R 32. Is there a reason this shouldn't work? Thanks, Tal ----------------Contact

Hi, As comments are welcome I will give my two cents and a patch suggestion :-) 2017-07-06 10:42 GMT+02:00 Dirk Eddelbuettel <edd at debian.org>: > > > I have used such settings (such as un-setting R_LIBS_USER or its > predecessors) for over a decade, it just works (if you give write > permissions). It clearly helps us at work because everybody sees by > the default the

On 16 March 2023 at 13:39, Felipe Contreras wrote: | I see R by default installs packages in ~/R. I know I can change the | default directory with R_LIBS_USER, but software shouldn't be | polluting the home directory. | | For example both python and node install packages to ~/.local/lib, | ruby to ~/.local/share. They don't install to for example ~/node. | | R should do the same: it

On Mon, 03-07-2017, at 07:58:41, Dirk Eddelbuettel <edd at debian.org> wrote: > On 2 July 2017 at 23:24, Kirill M?ller wrote: > | On 02.07.2017 22:01, Dirk Eddelbuettel wrote: > | > On 2 July 2017 at 21:39, Kirill M?ller wrote: > | > | Hi > | > | > | > | An upgrade to R 3.4.1 on Ubuntu removed the default setting of > | > | R_LIBS_USER in /etc/R/Renviron.

AFAIU, 'R CMD check --as-cran' tries to hide any site and user package libraries by setting R_LIBS_SITE and R_LIBS_USER. However, contrary to R_LIBS_SITE, it fails for R_LIBS_USER and the user's personal library is still available for test scripts. Should I revise my assumptions, or is that intentional? The short version. Shouldn't: $ R_LIBS_USER='' Rscript --vanilla -e

I have a local library 'dart' that imports "httr". It has routines that access central patient data such as birth date, so it is heavily used locally but of no interest to anyone else. The httr library (and 300 others) are in a shared directory, referenced by everyone in the biostatistics group via adding this location to the .libPaths in their default .Rprofile.

I want my local libraries to have priority over the system installed ones, which, as far as I can make out from help(".libPaths"), means they have to come first in that list (it doesn't actually_say_ so, but that seems to be the idea). We have R_LIBS_USER which looks made for specifying where I keep my own libraries. Unfortunately it comes last in .libPaths() [which appears to

Hi. I've tried to find this solution and have not been successful. Never used wine before and am just getting into Linux. Opensuse 10.3. Wine is installed. Using Wine-door. I have an application that has 2 CD's. the first CD installs then asks for the 2nd CD. Unable to eject the first cd. Get error message media is busy and can't eject. Can't figure out how to get it to

Hi, When I install a package as a non-root user, it gets saved in a path such as ~/R/x86_64-unknown-linux-gnu-library/3.4 for any R version 3.4.x. Thus, if I want to install the packages somewhere else, as root say, I might do install.packages("somepackage","/some/where/else/R/site-library/3.4") In this case I would then want to construct the appropriate path in, say,

> .expand_R_libs_env_var("poof/%p/%v") [1] "poof/x86_64-w64-mingw32/3.4" Bill Dunlap TIBCO Software wdunlap tibco.com On Fri, Jan 12, 2018 at 4:49 AM, Loris Bennett <loris.bennett at fu-berlin.de> wrote: > Hi, > > When I install a package as a non-root user, it gets saved in a path > such as > > ~/R/x86_64-unknown-linux-gnu-library/3.4 >

I'm the faculty member in my department who advises our IT staff on the details of installing R for students and faculty on our Windows 7 lab network. We are about to upgrade from R 3.1.1 to R 3.2.1, and once that is done, this version of R and all installed packages will be frozen in the image that appears in C:/Program Files/R/R-3.2.1/ on every lab computer, and this image is refreshed