similar to: libRblas.so: cannot open shared object file: No such file or directory

For example, install.packages("emplik") is failing with: libRblas.so: cannot open shared object file: No such file or directory As Dirk pointed out, this is likely an error in the emplik package, Steve On 09/23/2018 09:57 AM, Ista Zahn wrote: > On Sat, Sep 22, 2018 at 4:08 PM Steve Gutreuter <sgutreuter at gmail.com> wrote: >> R 3.5.1 is installed under Linux Mint

Thanks Dirk.? That is what I thought, and sessionInfo() returns: Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/atlas/libblas.so.3.10.3 LAPACK: /usr/lib/x86_64-linux-gnu/atlas/liblapack.so.3.10.3 locale: ?[1] LC_CTYPE=en_US.UTF-8?????? LC_NUMERIC=C ?[3] LC_TIME=en_US.UTF-8??????? LC_COLLATE=en_US.UTF-8 ?[5] LC_MONETARY=en_US.UTF-8??? LC_MESSAGES=en_US.UTF-8 ?[7]

On 22 September 2018 at 16:08, Steve Gutreuter wrote: | R 3.5.1 is installed under Linux Mint 19 from binaries r-base and | r-base-dev from ubuntu bionic-cran35.? Mysteriously, packages using | libRblas cannot be compiled.? I get: libRblas.so: cannot open shared | object file: No such file or directory.? And indeed, I find no libRblas.so. | | Any ideas about how to fix this? What does

Hello, macosx 10.13.6, Rdevel r76458 I'm trying to compile against openblas to reproduce an error on the CRAN check page (my package is clean under winbuilder and all but one of the checks). I've downloaded and installed openblas 0.3.7 but I am not 100% sure that it is being used by R. Using ./configure --with-blas="-lopenblas" Then running R to discover the PID I get:

I would love to hear from anyone who has successfully built 3.5.0 under Ubuntu 18.04 (Bionic Beaver). My attempts have failed, including: export LDFLAGS="$LDFLAGS -fPIC" export CXXFLAGS="$CXXFLAGS -fPIC" export CFLAGS="$CFLAGS -fPIC" ./configure --enable-R-shlib --prefix=/usr/lib/R/3.5.0 #### Configure completes normally without errors or warnings make #### make

On 23 September 2018 at 10:09, Steve Gutreuter wrote: | For example, | | install.packages("emplik") | | is failing with: libRblas.so: cannot open shared object file: No such | file or directory | | As Dirk pointed out, this is likely an error in the emplik package, I made one educated guess. Now we have more information and can update: - this is a CRAN package so everybody can

Thanks! ?"jammy" made it work. ? For some reason, ?lsb_release -cs is returning "victoria" rather than "jammy", and $> sudo apt update Hit:1 http://archive.ubuntu.com/ubuntu jammy InRelease Ign:2 http://packages.linuxmint.com victoria InRelease Get:3 http://archive.ubuntu.com/ubuntu jammy-updates InRelease [119 kB] Hit:4 http://packages.linuxmint.com victoria

I just upgraded from Linux Mint 20 to 21 and am no longer able to add the CRAN Ubuntu repository to my list of repositories. ?I am getting: $> sudo /usr/bin/add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -cs)-cran40/" $> sudo apt update Hit:1 http://security.ubuntu.com/ubuntu jammy-security InRelease Hit:2 http://archive.ubuntu.com/ubuntu jammy

I get the failure message. To be specific: adcomp.git>R CMD BATCH --quiet test_nlminb.R adcomp.git>cat test_nlminb.Rout > f <- function(x) sum( log(diff(x)^2+.01) + (x[1]-1)^2 ) > opt <- nlminb(rep(0, 10), f, lower=-1, upper=3) > xhat <- rep(1, 10) > abs( opt$objective - f(xhat) ) < 1e-4? ## Must be TRUE [1] FALSE My system is described by: adcomp.git>uname

On Wed, 8 May 2019 at 04:52, Peter Langfelder <peter.langfelder at gmail.com> wrote: > > (CCing the R-devel list, maybe someone will have a better answer.) > > To be honest, I don't know how to. I wasn't able to configure R to use > OpenBLAS using the configure script and options on my Linux Fedora system. > I configure it without external BLAS, then replace the

On Mon, 04 Dec 2023 13:41:47 -0500 Steve Gutreuter <sgutreuter at gmail.com> wrote: > $> sudo /usr/bin/add-apt-repository "deb > https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release > -cs)-cran40/" Looks like `lsb_release -cs` returns a Mint codename for you. Thankfully, since we know that Linux Mint 21 is based on Ubuntu 22.04 "Jammy Jellyfish", it

On Tue, May 22, 2018 at 6:47 PM, Steve Gutreuter <sgutreuter at gmail.com> wrote: > I would love to hear from anyone who has successfully built 3.5.0 under > Ubuntu 18.04 (Bionic Beaver). This is the wrong list, see R-sig-debian. That said, apt-get update apt-get build-dep r-base wget https://cran.r-project.org/src/base/R-3/R-3.5.0.tar.gz tar -xvf R-3.5.0.tar.gz cd R-3.5.0

I suspect the main difficulty the OP is having is building R with shlib support. Steve, can you build from source without the --enable-R-shlib flag on configure? Kevin On 05/23/2018 01:58 PM, Ista Zahn wrote: > On Tue, May 22, 2018 at 6:47 PM, Steve Gutreuter <sgutreuter at gmail.com> wrote: >> I would love to hear from anyone who has successfully built 3.5.0 under >>

I’ve installed R 3.1 with the latest Fedora rpm (R-3.1.0-5.el6.x86_64.rpm) and I run into some issues with openblas. I’ve documented this with an open question on stack overflow here: http://stackoverflow.com/questions/24158372/openblas-r-3-1-and-fedora-centos-dist Basically before 3.1 I had 3.02 and I was able to install and use openblas following the instruction from official CRAN

Dear R developers, I just compiled the latest version of R (2.12.1) and noticed that 'libRblas.so' is missing in the '/x86_64/src/extra/blas' subdirectory of my R-installation. Did I miss ongoing discussions on the Mailinglist about this or might it be a local problem? Thanks for this brilliant software. Best Christian -- Christian Kohler Institute of Functional Genomics ~

Hi, everybody. I notice debian packages for Ubuntu on CRAN are missing "libRblas.so" and I'm trying to find out why. Why do I care? We are working in an hpc project in a CentOS Linux cluster. That led me to the question of "which BLAS is fastest?" Dirk E referred me this morning to the R admin manual. The standard R compilation creates a shared blas library libRblas.so

When I read a .gz file with readLines() in 3.4.3, it returns text (and a warning). In 3.5.0, it gives a warning, but no text. Is this expected behavior or a bug? 3.4.3: > source_file = "1k_annotation.gz" > readfile_con <- gzfile(source_file, "r") > readLines(readfile_con, n = 5) [1] "#chr\tpos\tref\talt\t <truncated output here> Warning message: In

Hi,       I am trying to debug R on fedora9.0. When I use gdb to debug R-1.9.2, I am getting the error "R: error while loading shared libraries: libRblas.so: cannot open shared object file: No such file or directory" "Program exited with code 0177. Missing separate debuginfos, use: debuginfo-install glibc.i686" I have libRblas.so shared library in two paths, 1)

Hello, I've been trying to use R-2.11.1 but I get the following error when trying to run R on linux: "error while loading shared libraries: libRblas.so: cannot open shared object file: No such file or directory" How can I solve this problem? Best, Katy

Hi, I tried to compile R with openblas on a ubuntu 12.04 machine. I have to say that I normally use the package system and that I have no experience with compiling R. I did the following: ./configure --enable-BLAS-shlib --enable-R-shlib LIBnn=lib --with-blas="-L/usr/lib/openblas-base/ -lopenblas" --enable-memory-profiling --with-x=yes go the output: R is now configured for