Displaying 20 results from an estimated 400 matches similar to: "Segfault on ubuntu 18.04"
2018 Jul 05
2
Segfault on ubuntu 18.04
I am running R 3.5.1 on ubuntu 18.04, installed via apt. When I run R
from the bash prompt, I get (reinstalling r-base doesn't help)
> devtools::install_github("goranbrostrom/eha", build_vignettes = TRUE)
*** caught segfault ***
address 0x68456, cause 'memory not mapped'
Traceback:
1: dyn.load(file, DLLpath = DLLpath, ...)
2: library.dynam(lib, package,
2018 Jul 06
0
Segfault on ubuntu 18.04
Just as one more datapoint: I cannot reproduce the segfault, with
R 3.5.1 on (L)Ubuntu 18.04. (I use the Ubuntu package, i.e. I did not
build from source.)
regards
Enrico
Quoting G?ran Brostr?m <goran.brostrom at umu.se>:
> I am running R 3.5.1 on ubuntu 18.04, installed via apt. When I run
> R from the bash prompt, I get (reinstalling r-base doesn't help)
>
2018 Jul 09
0
Parametrized Vignettest in R packages
Dear Yihui,
Thank you for the valuable questions.
sample_analysis is a "tibble" while
configuration is an "R6" class.
But I also have parametrized reports where I pass R reference classes
as arguments.
This is the Rmd yaml params part corresponding to the error message.
params:
configuration: !r get(data(skylineconfig))
data: !r get(data(sample_analysis))
Might the R6
2012 May 15
1
KEGGSOAP installation error
Hello,
I'm trying to install KEGGSOAP with bioconductor but i'm facing this
problem:
/> biocLite("KEGGSOAP")
BioC_mirror: http://bioconductor.org
Using R version 2.15, BiocInstaller version 1.4.4.
Installing package(s) 'KEGGSOAP'
trying URL
'http://www.bioconductor.org/packages/2.10/bioc/src/contrib/KEGGSOAP_1.30.0.tar.gz'
Content type
2009 Jan 07
1
Compiling R for Solaris 10 Intel
Hi,
I downloaded 2.8.1 and tried to compile it using gcc 3.4.6. (simple install, just ./configure, make, make check, make install)
I found that it compiled and went through the tests fine.
The foreign library, however, that seems to be segfaulting on me (see output below). I did see an old posting about a similar problem, but there was no resolution. Have other people experienced this at all?
2011 Jan 27
0
Problems installing gputools
Hi,
I have some surprising trouble installing the gputools package.
This is a linux box running Fedora with an Nvidia GeForce GTX 260 card
and R 2.12.1
I had gputools running on it for the past several months. Wanting to
update to the newest version, I simply executed
install.packages("gputools") from within R. This should mean that the
problem isn't in the hardware or OS.
Errors
2018 Oct 04
0
segfault issue with parallel::mclapply and download.file() on Mac OS X
Thanks for the report, but unfortunately I cannot reproduce on my system
(either macOS nor Linux, from the command line) to debug. Did you run
this in the command line version of R?
I would not be surprised to see such a crash if executed from a
multi-threaded application, say from some GUI or frontend that runs
multiple threads, or from some other R session where a third party
library
2007 Dec 10
1
Building R on Sun Solaris 10 (SPARC) using Sun Studio 12
R Help List:
Just curious if anyone has successfully built R on a SPARC
platform running Sun Solaris 10 using the latest Sun Studio
12 set of compilers. If so, I would be interested in the
compile flags that you used.
I have tried several different builds of version 2.5.1, 2.6.0,
and 2.6.1 using various different compile flags and I am able
to compile and check, but for whatever reason, the
2018 Feb 19
0
Include pre-existing PDF files as vignettes in an R package?
On 18/02/2018 9:06 PM, Michael Hannon wrote:
> Greetings. The group that I work with has just started using the approach
> outlined in Karl Broman's handy primer:
>
> http://kbroman.org/pkg_primer/pages/vignettes.html
>
> to create vignettes for a couple of R packages.
>
> This works fine as long as we have a current Rmd version of the vignette. But
> we
2018 Feb 19
0
Include pre-existing PDF files as vignettes in an R package?
Hi Mike,
Did you read the relevant section of the official "Writing R
Extensions" manual? If so, what about the instructions provided there
do you find lacking?
Best,
Ista
On Sun, Feb 18, 2018 at 9:06 PM, Michael Hannon
<jmhannon.ucdavis at gmail.com> wrote:
> Greetings. The group that I work with has just started using the approach
> outlined in Karl Broman's handy
2018 Sep 20
0
segfault issue with parallel::mclapply and download.file() on Mac OS X
This code actually happens to work for me on macOS, but I think in
general you cannot rely on performing HTTP requests in fork clusters,
i.e. with mclapply().
Fork clusters create worker processes by forking the R process and
then _not_ executing another R binary. (Which is often convenient,
because the new processes will inherit the memory image of the parent
process.)
Fork without exec is not
2012 Feb 23
1
segfault when using data.table package in conjunction with foreach
Hi all,
I'm trying to use the package read.table within a foreach loop. I'm
grabbing 500M rows of data at a time from two different files and then
doing an aggregate/tapply like function in read.table after that. I
had planned on doing a foreach loop 39 times at once for the 39 files
I have, but obviously that won't work until I figure out why the
segfault is occurring. The
2018 Feb 19
4
Include pre-existing PDF files as vignettes in an R package?
Greetings. The group that I work with has just started using the approach
outlined in Karl Broman's handy primer:
http://kbroman.org/pkg_primer/pages/vignettes.html
to create vignettes for a couple of R packages.
This works fine as long as we have a current Rmd version of the vignette. But
we have some old PDF documents that we'd like to include as vignettes as well.
I'd like
1998 Aug 25
0
Variations on the t test
One of the things that have been annoying me with both Splus and R is
that the "simple tests" are inconsistent with the lm/glm/dataframe
conventions, and that they become quite awkward to use when data have
to be extracted from a dataframe:
t.test(data$bp[data$sex=="F" & data$age>25], data$bp[data$sex=="M" &
data$age>25])
OK, so it's better to do
2013 Jun 07
1
cannot load pbdMPI package after compilation
Hello,
I try to install pbdMPI.
Compilation successful, but load fails with segfault.
Is anyone can help me?
R version 3.0.0
pbdMPI version 0.1-6
Intel compiler version 13.1.1
OpenMPI version 1.6.4-1
CPU Intel x86_64
# R CMD INSTALL pbdMPI_0.1-6.tar.gz
..
....
checking for gcc... icc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name...
2008 Mar 12
1
gracefully handing a library load error
I have an R program I am attempting to use to generate some SVGs. I've been
using the cairoDevice library. When running a session not connected to an X
session (like if I'm sshed in), attempting "library(cairoDevice)" causes:
*** caught segfault ***
address 0x8, cause 'memory not mapped'
Traceback:
1: .C("R_gtk_setEventHandler", PACKAGE =
2012 Feb 06
1
Segfault on ".C" registration via R_CMethodDef according to 'Writing R Extensions'.
Dear R List,
I encountered a serious problem regarding the registration of ".C" when following the documentation "Writing R Extensions"
that leads to a segmentation fault (tested on windows and mac os x).
The registration mechanism for ".C" routines via R_registerRoutines and
the R_CMethodDef structure has been enhanced recently with the
addition of two fields, one
2018 Nov 23
1
[tryExcept] New try Function
Hi Emil,
First, thanks for the response. As you mentioned, a lot of times tryCatch
does the work, as you can return a value. However, sometimes it is useful
to assign several variables when an error occurs. You could do it with <<-,
but I prefer to reduce it's usage unless completely necessary.
I guess that the attachment was missed in the moderation. Here it is the
function:
2008 Oct 29
0
Package arm
I am having difficulty installing the arm package and would be
grateful if anyone could give some advice.
I have updated my computer to a Mac OS X version 10.5.5 ( processor: 2
x 2.8 GHz Quad-Core Intel Xeon) and I have downloaded R version 2.8.0
I have downloaded the package arm, but when i try to install it, the
following message is given in R:
Loading required package: MASS
Loading
2007 May 11
0
data.entry bugs
In session of R, occour following bug's in de (data.entry) function.
*** caught segfault ***
address 0x2c, cause 'memory not mapped'
Traceback:
1: dataentry(odata, as.list(Modes))
2: de(..., Modes = Modes, Names = Names)
3: data.entry(posto, fecha, serie = registros, status)
4: onEditaSerie(serie, "serie")
5: function () serie <- onEditaSerie(serie,