similar to: Updating qvalue and xtable

I am using storey's qvalue package but I keep on getting errors. Why is this? > qvalue(p, lambda=0.5)$pi0 [1] "ERROR: p-values not in valid range." Error in qvalue(p, lambda = 0.5)$pi0 : $ operator is invalid for atomic vectors -- Thanks, Jim. [[alternative HTML version deleted]]

Dear colleagues, This is not strictly a R question, but I hope it is ok to ask on the list. I fed a vector of p-values from about 20 million anova tests to the package q-value and obtained this output: > qsummary(asso_p.qvalue) Call: qvalue(p = asso_p.vec) pi0: 1 Cumulative number of significant calls: <1e-04 <0.001 <0.01 <0.025 <0.05 <0.1 <1

Dear All, In Storey's estimator of the proportion of true nulls, the estimator depends on the tuning parameter lamda. Suppose now that an estimator of this proportion has been obtained by the qvalue package, what is the lamda that corresponds to the estimate? How to get this lamda? Thanks, -Chee [[alternative HTML version deleted]]

Had some packages fail install so I updated to today's R-beta release. On updating packages the following packages still fail. sessionInfo follows. Mark Warning messages: 1: In install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : installation of package 'MANOR' had non-zero exit status 2: In install.packages(update[instlib == l,

Hello all, I'm trying to use the package qvalue. Upon trying to install it I'm running into trouble. I re-downloaded and installed the most recent CRAN distribution of R which announced itself to have tcltk included. Now when I try to load qvalue I'm getting errors that seem to indicate that I need tcltk2. I tried going to get that package and loading it but both qvalue and tcltk seem

splm package is a r implemention of spatial panel data models. and the loglik paremeter is most important infomation for splm methods. but i found the loglik always been null ,it's craze to get right estimation in splm with null loglik. Any one knows the splm package and can get the right loglik ? please help me. thanks -- View this message in context:

Dear list, I have been trying to run the function "qvalue" under the package qvalue on a vector with about 20 million values. > asso_p.qvalue<-qvalue(asso_p.vector) Error: cannot allocate vector of size 156513 Kb > sessionInfo() Version 2.3.1 (2006-06-01) i686-pc-linux-gnu attached base packages: [1] "methods" "stats" "graphics"

Hi, I am trying to install qvalue, however its giving installation error -> Error : package 'tcltk' does not have a name space ERROR: lazy loading failed for package ?qvalue? * removing ?/home/sbw/R/x86_64-unknown-linux-gnu-library/2.12/qvalue? The downloaded packages are in ?/tmp/RtmpKnS1X4/downloaded_packages? Warning message: In install.packages(pkgs = pkgs, repos = repos, ...)

Hi, I have a huge dataset (53 million records). I have to calculate the p and q values of my data. How can I do it in R or perl? I have downloaded R (I'm completely new to R). and the package qvalue but I don't understand how can I call/use qvalue package with R. When I type library(qvalue), it gives me an error that this package doesn't exist. What should I do? Thanks! -- View this

Hello, I'm attempting to install the splm package from R-Forge. https://r-forge.r-project.org/R/?group_id=352 The page says, "In order to successfully install the packages provided on R-Forge, you have to switch to the most recent version of R..." It later says "To install this package directly within R type: install.packages("splm",

Hi, All I got trouble on installing the qvalue package. Error message: package 'tcltk' does not have a name space [cchen1 at ibibmem Yale_CB]$ R CMD INSTALL qvalue.tar.gz * installing to library '/cchome/cchen1/R/x86_64-unknown-linux-gnu-library/2.10' * installing *source* package 'qvalue' ... ** R ** data ** inst ** preparing package for lazy loading Error : package

Dear R-project members, I'm a newbie in R and I'm trying to install the "splm" package to analyze spatial panel data. I have the R x64 2.12.0 beta version installed in my computer. When I try to install the package from within R typing ">install.packages("splm", repos="http://R-Forge.R-project.org")", I get the error message "Warning:

Hello, I have the fellowing problem and I am thankful for any advice! Regards, Samuel ################################################################ >   source("http://bioconductor.org/biocLite.R") BioC_mirror = http://www.bioconductor.org Change using chooseBioCmirror(). >     biocLite("SSPA") Using R version 2.11.0, biocinstall version 2.6.7. Installing

Hello, I'm apologize to have made failure before. I wrote this : p<-scan("teststat.txt") on R and R returns Error in scan ("teststat.txt") : "scan" expected a real, got "x". I don't really understand,because teststat has been created, so........ Thanks a lot. Sandrine

On Mon, Sep 23, 2024 at 10:49:07AM +0200, Danilo Krummrich wrote: > > 2. Proposal for upstream > > ======================== > > What is the strategy in the mid / long term with this? > > As you know, we're trying to move to Nova and the blockers with the device / > driver infrastructure have been resolved and we're able to move forward. Besides > that, Dave

On Tue, Jun 19, 2012 at 1:11 PM, Saima Bashir <saimabashir11 at yahoo.com> wrote: > Hi Sarah, > > I have installed and loaded them into R but get same error. > > I am using four equations, cross-section data, version R i386 2.15.0. That is by no means all the information I requested in my original reply, or all that is requested in the posting guide. Nobody can help you

Hi all, apologies if this has been answered before, I didn't find the answer in the archives. I am putting together a package that I would like to have optional functionality if another package is installed. In normal, non-package code, I would simply write something like if (require(qvalue)) { # use package qvalue } else { # do not use package qvalue } If I do something like that in a

In order to coerce Rails 1.2.x into supporting Unicode values for an attribute in a model, I found I had to do the following: 1) Change the underlying column type from varchar to nvarchar. 2) Prepend any quoted values going into nvarchar columns with a capital-letter-N, e. g. ''unicode'' becomes N''unicode'' In order to accomplish this, I modified

Hi. I've just bought SIP telephony service from a Swedish telco. I've managed to make and receive calls with kphone. Now I want to set up asterisk to be able to add fancy features like voice mail and recording conversations. But first I have to get the basic setup right. I'm running asterisk and kphone on the same machine, behind at NAT-router. When I make a call (from my regular

On Mon, Jan 07, 2019 at 08:44:50AM +0000, Colin Watson wrote: > On Mon, Jan 07, 2019 at 01:58:19AM +0100, Hans van Kranenburg wrote: > > Ok great. Since I'm not using (and probably not going to use) the > > multi-stage multiboot things, this is harder for me to help with. > > With any luck I should be able to work that bit out myself, since I > think stable's Xen