similar to: Cannot install broom package

Dear R-help list members, I have created a package 'mnormt' with facilities for the multivariate normal and t distributions. The core part is simply an interface to Fortran routines by Alan Genz for computing the integral of two densities over rectangular regions, using an adaptive integration method. Other R functions compute densities and generate random numbers. The starting

I'm sorry I haven't boiled this down to a more-minimal example yet, but ... I'm working on an S3 method (tidy.merMod, in the 'broom' package). It normally handles 'merMod' objects from the lme4 package, but I'm trying to make it handle 'merModLmerTest' objects from the lmerTest package too. The merModLmerTest class inherits (as an S4) class from the

I'm running Ubuntu 17.04 and R 3.4.1. I installed the latter yesterday, so I presume it's the latest version. I want to install Tidyverse, which I've spent many happy hours with under Windows. But when I do install.packages("tidyverse") , I get errors about unrecognized command line options to gcc. These start when the install hits the colorspace and munsell packages.

Hi, Let's say one has an object with multiple classes, and a generic function to apply to it has associated S3 methods for more than one of those classes. Further, the method it chooses (I do not know how; some order in the class vector?) is not the suitable one and it produces an error. Would there be some way to make the generic function to choice the correct method, or in case that for

[Hope this is the right list where to send...] An attempt to update package 'mnormt' involves the addition of a small new function called 'pd.solve'. When I come to the package checking stage, an error occurs in parsing pd.solve.Rd. The full transcript of the outcome is copied below (it includes details on my installation) but the critical point is where the \examples{} section

Hello, I noticed a strange thing when attempting to upgrade a specific package (lavaan) from c2d4u and wondered if someone could confirm the problem. In short, apt seems to think that an older version from the "universe" repo is higher than the newer version from c2d4u. When I do apt-cache showpkg r-cran-lavaan I get the output at the bottom of this email. Then, I tried to force

Carlos, capaz no me explique bien, va de nuevo... Tengo un dataFrame con varias variables que describen Lotes (127), he creado un código que calcula nuevas variables, re codifica otras y ordenas otras tantas. Es muy laborioso correr ese código 127 veces por lo cual quería hacer un sentencia (del tipo if() o repeat()), para obtener al final todos los lotes procesados. Saludos y gracias por tan

I have drawn a 3D scatter plot : library(mnormt) library(scatterplot3d) dat = cbind(rmnorm(3, rep(0,2), diag(2)), 1:3) scatterplot3d(dat) Now I want to do 2 things : 1 : In the Z-axis (i.e. height), I want to see only numbers 1,2,3, etc NOT, 1,1.5,2,2.5............. 2. I want to add two Horizontal planes at hight z=2 and z=3. Those two planes should look like "bottom" of that 3D plot

Dear R-list member, I'm using the function pmnorm() (-->library(mnormt)) within a for-loop. Certain parameter values leads to an error message: "(In sqrt(diag(S)) : NaNs produced, In sqrt(1/diag(V)) : NaNs produced, In cov2cor(S) : diag(.) had 0 or NA entries; non-finite result is doubtful)" obviously because "NaNs" were produced. Is it possible to tell R that it

The model should be class aov or lm and my model class is aovlist. tried tidy from broom library but did not work. To make it class aov, I had to remove the error term; model <- aov(Rotationdata_R$`GY(Mg/ha)`~Rep+code*as.factor(Nitrogen),data=Rotationdata_R) Ahmed Attia, Ph.D. Agronomist & Soil Scientist On Mon, Dec 25, 2017 at 7:38 PM, David Winsemius <dwinsemius at

I'm trying to implement a recursive function using integrate, and I suspect I need a Vectorize somewhere, but I can't suss it out. Any help would be appreciated. I've tried traceback() and various debugging ideas to no avail (most likely due to my inexperience with these tools.) Here's what I have. Nk <- function(m, C) { if (length(m) > 1) { rho <- C[1, -1]

Dear all, I know there have been various questions posted over the years about loops but I'm afraid that I'm still stuck. I am using Windows XP and R 2.9.2. I am generating some data using the multivariate normal distribution (within the 'mnormt' package). [The numerical values of sanad and covmat are not important.] > datamat <-

I used ggplot to create a scatter plot : library(ggplot) library(mnormt) Sigma = matrix(c(1, 0.6, 0.6, 1), 2, 2) x = rmnorm(20, c(0,0), Sigma) xx = x[order(x[,1]),] y = xx[,1] z = xx[,2] qplot(z, y, type="point", main="x-y plot", xlab="x", col="blue") However I want following: 1. Plot color must be Blue (where it is displaying as red) 2. There should not

Hello, I'm using dmnorm from the package {mnormt} and getting strange results. First, according to the documentation, dmnorm should return a vector of densities, and I'm only getting one value returned (which is what I would expect). I've been interpreting this as the joint density of all values in the x vector (which is what I want). Should a vector of densities be returned, and if

I am working with the pmt function in the {mnormt} package, and i am getting negative values returned. the following is an example of one of my outputs: pmt(x = c(3.024960, -1.010898), mean = c(21.18844, 21.18844), S = matrix(c(.319,.139,.139,0.319), 2, 2),df = 42) # -6.585641e-18 Any help on why i'm getting negative numbers would be very much appreciated. THanks! -- View this message in

Hi all, it seems that there is problem with function "adaptIntegrate", when the integration limits is infinity. Please see the code below. The second integration does not seem to work. Can anyone familiar with this give some help? Thank you with much. Hanna library(mnormt) library(cubature) ff <- function(x, rho){ mu <- rep(0,3) Sigma

Hi All. I'd like to generate a sample of n observations from a k dimensional multivariate normal distribution with a random correlation matrix. My solution: The lower (or upper) triangle of the correlation matrix has n.tri=(d/2)(d+1)-d entries. Take a uniform sample of n.tri possible correlations (runi(n.tr,-.99,.99) Populate a triangle of the matrix with the sampled correlations Mirror the

> On Dec 25, 2017, at 2:09 PM, Ahmed Attia <ahmedatia80 at gmail.com> wrote: > > The model should be class aov or lm and my model class is aovlist. > tried tidy from broom library but did not work. To make it class aov, > I had to remove the error term; > > model <- aov(Rotationdata_R$`GY(Mg/ha)`~Rep+code*as.factor(Nitrogen),data=Rotationdata_R) You seemed to have

I am trying to use the dmt function in the package {mnormt}. Throughout my algorithm, the covariance matrix is sometime calculated to be singular. When attempting to calculate the dmt function with a covariance that is not positive definite, I would like it to return Inf or NaN instead of an error message. I have been using the try function, however it is not yeilding the desired result. (I did

Hi everyone, Using R 2.10.1 on Windows Vista. DOWNLOADED PACKAGES DO NOT INSTALL. I expect to see them in C:\Program Files\R\R-2.10.1\library These files download (see below). And they are all in zip format. What am I doing wrong? Please help. All suggestions appreciated. trying URL 'http://cran.cnr.Berkeley.edu/bin/windows/contrib/2.10/RColorBrewer_1.0-2.zip' Content type