Displaying 20 results from an estimated 5000 matches similar to: "R: dplyr, doBy, and ggplot2 in CentOS7"
2017 Oct 30
2
R: dplyr, doBy, and ggplot2 in CentOS7
On Mon, Oct 30, 2017 at 10:56 AM Tony Schreiner <anthony.schreiner at bc.edu>
wrote:
> On Mon, Oct 30, 2017 at 10:27 AM, Larry Martell <larry.martell at gmail.com>
> wrote:
>
> > I have a R script that I am running from python with rpy2. On a debian
> > system I run this:
> >
> > apt-get install R-cran-ggplot2 R-cran-caret
> >
> > And the
2017 Oct 30
0
R: dplyr, doBy, and ggplot2 in CentOS7
You can install any R packages from CRAN using the ?"install.packages()"
command form within R itself. This will download, compile, and install the
packages into your personal user account. you might need to install some
supporting *-devel RPM packages via "yum", but otherwise, it should work.
---------------------------------------------------------------------------
Jason
2017 Oct 30
0
R: dplyr, doBy, and ggplot2 in CentOS7
On Mon, Oct 30, 2017 at 10:27 AM, Larry Martell <larry.martell at gmail.com>
wrote:
> I have a R script that I am running from python with rpy2. On a debian
> system I run this:
>
> apt-get install R-cran-ggplot2 R-cran-caret
>
> And the script works. I want to move this to CentOS 7 system. There it
> cannot find R-cran-ggplot2 or R-cran-caret. Does anyone know what
2017 Nov 29
5
Preventing repeated package installation, or pre installing packages
I have a R script that I call from python using rpy2. It uses dplyr, doBy,
and ggplot2. The script has install.packages commands for these 3 packages.
Even thought the packages are already installed it still downloads,
builds, and installs them, which is very time consuming. Is there a way to
have it only do the install if the package is not already installed?
Also, I run in a docker container,
2015 Jun 03
6
creating RPMs from CRAN tarballs
This is not specifically a CentOS question, but I am creating RPMS for
CentOS 6 from some CRAN tarballs.
I run R2spec -s tarball to create a spec file, and most of the time it
works ok, but sometimes (RPostgresSQL, Rcpp for example) the package has
test or example programs that start with
#!/usr/bin/r
with lower case r, and the resulting package then winds up with a
dependency on /usr/bin/r,
2017 Jul 20
2
Installing rpy2 on Red Hat 6
I need to install rpy2 on RHEL6. The version of R in the 6 repos is
3.0, and rpy2 does not work with that version. I installed R 3.3.3
following the directions here:
https://oguya.ch/posts/2017-03-18-building-R-on-rhel-6/. But even with
3.3.3 it's still failing. Using pip it fails with:
/usr/local/lib64/R/lib/libR.a(CommandLineArgs.o): could not read
symbols: Bad value
and installing from
2017 Jul 20
0
Installing rpy2 on Red Hat 6
> On Jul 20, 2017, at 7:53 AM, Larry Martell <larry.martell at gmail.com> wrote:
>
> I need to install rpy2 on RHEL6. The version of R in the 6 repos is
> 3.0, and rpy2 does not work with that version. I installed R 3.3.3
> following the directions here:
> https://oguya.ch/posts/2017-03-18-building-R-on-rhel-6/. But even with
> 3.3.3 it's still failing. Using pip it
2009 Oct 06
2
Unable to load 'doBy' package
Hi all,
I am trying to load the doBy package, and I am getting the following error:
> library(doBy)
Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) :
there is no package called 'Hmisc'
Error: package/namespace load failed for 'doBy'
I tried updating R to the current version (2.9.2) and installing the most
recent version of the doBy package (4.0.2), and the error
2010 Apr 23
1
doBy and Hmisc on R version 2.11.0
I installed R 2.11.0, and I don't think I can load the doBy package
now. Any suggestions?
> library("doBy")
Loading required package: survival
Loading required package: splines
Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) :
there is no package called 'Hmisc'
Error: package/namespace load failed for 'doBy'
> sessionInfo()
R version 2.11.0
2010 Dec 08
1
Trouble Loading doBy and coin Packages
Good Evening R-Help Community:
I have attached a file that contains the output from sessionInfo() and a summary
of my Win XP system. I am?running R 2.12.0 and using Tinn-R 2.3.6.2 as my
interface. When I attempt to call either the doBy or coin packages R generates
an error that I do not understand and have so far not been able to resolve by
searching R resources.
I exchanged a couple of
2009 Jun 09
1
how to use "lapplyBy" function of "doBy" package
Dear Ruser's
I want to substitute each "NA" by the group mean of which the "NA" is
belonging to. For example, substitute the first record of traits "NA" by the
mean of "BSPy01-10" in the dummy dataframe.
I have ever tried to solve this problem by using doBy package. But, I
failed. I ask for the advice on how to use "lapplyBy" function of
2010 Dec 10
1
New Installs, Same Trouble Loading doBy and coin Packages
I tried Tal's suggestion of deleting the doBy and coin packages and then
reinstalling them from a different mirror. The first install was from the
Harvard mirror and the second was from the Case Western Univ. mirror. The new
packages generate the same errors when I call them using the library() command.
Also, I tried to load these packages using R and its script editor thinking that
the
2011 Jun 29
1
library(doBy) will not load
Greetings R Community,
One of my favorite packages won't load and I'm not sure why. It loaded earlier today. The problem appears with the snow package, which doBy requires. I tried reinstalling both packages again ,shutting [R] down, reinstalling [R] in the workspace (shortcut). Here's the weird thing. The same exact library loads in another workspace using the same version of [R]
2015 Jun 05
2
creating RPMs from CRAN tarballs
On 6/5/2015 3:09 AM, Peter wrote:
> On 06/04/2015 07:49 AM, Tony Schreiner wrote:
>> I run R2spec -s tarball to create a spec file, and most of the time it
>> works ok, but sometimes (RPostgresSQL, Rcpp for example) the package has
>> test or example programs that start with
>>
>> #!/usr/bin/r
>>
>> with lower case r, and the resulting package then
2011 Oct 22
4
issue loading doBy library
Hello,
How can I fix this? I have the latest version of R 2.13.2 and I use Mac OS X 10.7.2
> library(doBy)
Loading required package: lme4
Error in dyn.load(file, DLLpath = DLLpath, ...) :
function 'cholmod_l_start' not provided by package 'Matrix'
Error: package 'lme4' could not be loaded
> library(lme4)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
function
2011 Dec 09
1
Can not install doBy
Every time I try to install the doBy package I receive this error message:
Warning in install.packages :
error 1 in extracting from zip file
Warning in install.packages :
cannot open compressed file 'mvtnorm/DESCRIPTION', probable reason 'No
such file or directory'
Error in install.packages : cannot open the connection
Has anyone run into this problem?
Thanks,
Jason
--
2017 Dec 08
0
Preventing repeated package installation, or pre installing packages
On Wed, Nov 29, 2017 at 11:14 AM, Rainer Krug <Rainer at krugs.de> wrote:
>
>
> On 29 Nov 2017, at 15:28, Larry Martell <larry.martell at gmail.com> wrote:
>
> I have a R script that I call from python using rpy2. It uses dplyr, doBy,
> and ggplot2. The script has install.packages commands for these 3 packages.
> Even thought the packages are already installed it
2017 Nov 29
0
Preventing repeated package installation, or pre installing packages
> On 29 Nov 2017, at 15:28, Larry Martell <larry.martell at gmail.com> wrote:
>
> I have a R script that I call from python using rpy2. It uses dplyr, doBy,
> and ggplot2. The script has install.packages commands for these 3 packages.
> Even thought the packages are already installed it still downloads,
> builds, and installs them, which is very time consuming. Is there a
2019 Nov 11
2
R en Jupyter Lab, error al cargar dplyr: "namespace 'rlang' 0.3.4 is being loaded, but >= 0.4.0 is required"
Hola
Quiero ejecutar R desde Jupyter Lab y me encuentro con un error al invocar
la librería dplyr. Este error no aparece cuando ejecuto RStudio.
La sesión de R en jupyter lab:
sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 14393)
Matrix products: default
locale:
[1] LC_COLLATE=Spanish_Chile.1252
2018 May 30
2
Filtering using multiple rows in dplyr
Hi Folks,
I have just started using dplyr and could use some help getting unstuck. It could well be that dplyr is not the package to be using, but let me just pose the question and seek your advice.
Here is my basic data frame.
head(h)
subject ageGrp ear hearingGrp sex freq L2 Ldp Phidp NF SNR
1 HALAF032 A L A F 2 0 -23.54459 55.56005 -43.08282