similar to: R: dplyr, doBy, and ggplot2 in CentOS7

On Mon, Oct 30, 2017 at 10:56 AM Tony Schreiner <anthony.schreiner at bc.edu> wrote: > On Mon, Oct 30, 2017 at 10:27 AM, Larry Martell <larry.martell at gmail.com> > wrote: > > > I have a R script that I am running from python with rpy2. On a debian > > system I run this: > > > > apt-get install R-cran-ggplot2 R-cran-caret > > > > And the

You can install any R packages from CRAN using the ?"install.packages()" command form within R itself. This will download, compile, and install the packages into your personal user account. you might need to install some supporting *-devel RPM packages via "yum", but otherwise, it should work. --------------------------------------------------------------------------- Jason

On Mon, Oct 30, 2017 at 10:27 AM, Larry Martell <larry.martell at gmail.com> wrote: > I have a R script that I am running from python with rpy2. On a debian > system I run this: > > apt-get install R-cran-ggplot2 R-cran-caret > > And the script works. I want to move this to CentOS 7 system. There it > cannot find R-cran-ggplot2 or R-cran-caret. Does anyone know what

I have a R script that I call from python using rpy2. It uses dplyr, doBy, and ggplot2. The script has install.packages commands for these 3 packages. Even thought the packages are already installed it still downloads, builds, and installs them, which is very time consuming. Is there a way to have it only do the install if the package is not already installed? Also, I run in a docker container,

This is not specifically a CentOS question, but I am creating RPMS for CentOS 6 from some CRAN tarballs. I run R2spec -s tarball to create a spec file, and most of the time it works ok, but sometimes (RPostgresSQL, Rcpp for example) the package has test or example programs that start with #!/usr/bin/r with lower case r, and the resulting package then winds up with a dependency on /usr/bin/r,

I need to install rpy2 on RHEL6. The version of R in the 6 repos is 3.0, and rpy2 does not work with that version. I installed R 3.3.3 following the directions here: https://oguya.ch/posts/2017-03-18-building-R-on-rhel-6/. But even with 3.3.3 it's still failing. Using pip it fails with: /usr/local/lib64/R/lib/libR.a(CommandLineArgs.o): could not read symbols: Bad value and installing from

> On Jul 20, 2017, at 7:53 AM, Larry Martell <larry.martell at gmail.com> wrote: > > I need to install rpy2 on RHEL6. The version of R in the 6 repos is > 3.0, and rpy2 does not work with that version. I installed R 3.3.3 > following the directions here: > https://oguya.ch/posts/2017-03-18-building-R-on-rhel-6/. But even with > 3.3.3 it's still failing. Using pip it

Hi all, I am trying to load the doBy package, and I am getting the following error: > library(doBy) Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) : there is no package called 'Hmisc' Error: package/namespace load failed for 'doBy' I tried updating R to the current version (2.9.2) and installing the most recent version of the doBy package (4.0.2), and the error

I installed R 2.11.0, and I don't think I can load the doBy package now. Any suggestions? > library("doBy") Loading required package: survival Loading required package: splines Error in loadNamespace(i[[1L]], c(lib.loc, .libPaths())) : there is no package called 'Hmisc' Error: package/namespace load failed for 'doBy' > sessionInfo() R version 2.11.0

Good Evening R-Help Community: I have attached a file that contains the output from sessionInfo() and a summary of my Win XP system. I am?running R 2.12.0 and using Tinn-R 2.3.6.2 as my interface. When I attempt to call either the doBy or coin packages R generates an error that I do not understand and have so far not been able to resolve by searching R resources. I exchanged a couple of

Dear Ruser's I want to substitute each "NA" by the group mean of which the "NA" is belonging to. For example, substitute the first record of traits "NA" by the mean of "BSPy01-10" in the dummy dataframe. I have ever tried to solve this problem by using doBy package. But, I failed. I ask for the advice on how to use "lapplyBy" function of

I tried Tal's suggestion of deleting the doBy and coin packages and then reinstalling them from a different mirror. The first install was from the Harvard mirror and the second was from the Case Western Univ. mirror. The new packages generate the same errors when I call them using the library() command. Also, I tried to load these packages using R and its script editor thinking that the

Greetings R Community, One of my favorite packages won't load and I'm not sure why. It loaded earlier today. The problem appears with the snow package, which doBy requires. I tried reinstalling both packages again ,shutting [R] down, reinstalling [R] in the workspace (shortcut). Here's the weird thing. The same exact library loads in another workspace using the same version of [R]

On 6/5/2015 3:09 AM, Peter wrote: > On 06/04/2015 07:49 AM, Tony Schreiner wrote: >> I run R2spec -s tarball to create a spec file, and most of the time it >> works ok, but sometimes (RPostgresSQL, Rcpp for example) the package has >> test or example programs that start with >> >> #!/usr/bin/r >> >> with lower case r, and the resulting package then

Hello, How can I fix this? I have the latest version of R 2.13.2 and I use Mac OS X 10.7.2 > library(doBy) Loading required package: lme4 Error in dyn.load(file, DLLpath = DLLpath, ...) : function 'cholmod_l_start' not provided by package 'Matrix' Error: package 'lme4' could not be loaded > library(lme4) Error in dyn.load(file, DLLpath = DLLpath, ...) : function

Every time I try to install the doBy package I receive this error message: Warning in install.packages : error 1 in extracting from zip file Warning in install.packages : cannot open compressed file 'mvtnorm/DESCRIPTION', probable reason 'No such file or directory' Error in install.packages : cannot open the connection Has anyone run into this problem? Thanks, Jason --

On Wed, Nov 29, 2017 at 11:14 AM, Rainer Krug <Rainer at krugs.de> wrote: > > > On 29 Nov 2017, at 15:28, Larry Martell <larry.martell at gmail.com> wrote: > > I have a R script that I call from python using rpy2. It uses dplyr, doBy, > and ggplot2. The script has install.packages commands for these 3 packages. > Even thought the packages are already installed it

> On 29 Nov 2017, at 15:28, Larry Martell <larry.martell at gmail.com> wrote: > > I have a R script that I call from python using rpy2. It uses dplyr, doBy, > and ggplot2. The script has install.packages commands for these 3 packages. > Even thought the packages are already installed it still downloads, > builds, and installs them, which is very time consuming. Is there a

I need to run 3.6 on debian stretch - I followed the instructions here: https://cran.r-project.org/bin/linux/debian/ and I was able to install it. But 2 packages I need, r-cran-caret and r-cran-ggplot2 will not install: # apt-get install r-cran-ggplot2 Reading package lists... Done Building dependency tree Reading state information... Done Some packages could not be installed. This may mean

I need to run 3.6 on debian stretch - I followed the instructions here: https://cran.r-project.org/bin/linux/debian/ and I was able to install it. But 2 packages I need, r-cran-caret and r-cran-ggplot2 will not install: # apt-get install r-cran-ggplot2 Reading package lists... Done Building dependency tree Reading state information... Done Some packages could not be installed. This may mean