similar to: [PATCH nbdkit] streaming plugin: Add support for a sliding window

On 3/17/20 3:53 AM, Richard W.M. Jones wrote: > This can be used for creating temporary disks to thin clients, as a > kind of "remote tmpfs". > > See also: > https://www.redhat.com/archives/libguestfs/2020-March/msg00134.html > --- > +++ b/plugins/tmpdisk/nbdkit-tmpdisk-plugin.pod > @@ -0,0 +1,157 @@ > +=head1 NAME > + > +nbdkit-tmpdisk-plugin - create

Dear all, I would like to know if there is any R package that uses a sliding window approach to assess statistical significance out of my data. My data is composed of DNA sequences (of variable length) that are mapped to a genome with a determined score of alignment. So, I want to see if I can find more tags in a given region of the genome as opposed to finding them by chance. In this sliding

I’m pleased to announce the next stable release of nbdkit. This release concentrates on numerous feature enhancements - see the release notes below. NBD — Network Block Device — is a protocol for accessing Block Devices (hard disks and disk-like things) over a Network. nbdkit is a toolkit for creating NBD servers. The key features are: * Multithreaded NBD server written in C with good

This can be used for creating temporary disks to thin clients, as a kind of "remote tmpfs". See also: https://www.redhat.com/archives/libguestfs/2020-March/msg00134.html --- plugins/data/nbdkit-data-plugin.pod | 1 + plugins/file/nbdkit-file-plugin.pod | 1 + plugins/linuxdisk/nbdkit-linuxdisk-plugin.pod | 7 +- plugins/memory/nbdkit-memory-plugin.pod |

Dear all, I am having some problems with the folowing task and would appreciate any thoughts on the matter. I have a sliding window time series of rainfall. This is 24 hour window created from an hourly record. Every hour, a new twenty four hour total is calculated. I would like to extract the Top 50 twenty four hour totals however I have a problem. Simply ranking the sliding window time

This plugin now implements efficient zeroing, pre-fetch and extents, which should give quite a performance boost. XXX On the flip side, it no longer ignores flush and FUA (which we can ignore because these are temporary disks), which very likely has a large negative impact on performance. Fixing this would involve generalising fileops a little. --- plugins/tmpdisk/Makefile.am | 2 +

On Tue, Jan 22, 2019 at 02:57:33PM -0600, Eric Blake wrote: > On 1/21/19 12:15 PM, Richard W.M. Jones wrote: > > --- > > .../nbdkit-partitioning-plugin.pod | 29 ++-- > > plugins/partitioning/virtual-disk.h | 12 +- > > plugins/partitioning/partition-mbr.c | 132 +++++++++++++++--- > > plugins/partitioning/partitioning.c |

I have a time series of rainfall in a dataframe. I would like to be able to aggregate this using a sliding window approach- i.e. a new 24 hourly total is calculated for each hours rainfall. I'm struggling to understand how this might be achieved - currently I've tried looping a sum function to re-calculate a new total at every stage of the loop. for (inp[[9]] in

Dear all, I have some very big data files that look something like this: id chr pos ihh1 ihh2 xpehh rs5748748 22 15795572 0.0230222 0.0268394 -0.153413 rs5748755 22 15806401 0.0186084 0.0268672 -0.367296 rs2385785 22 15807037 0.0198204 0.0186616 0.0602451 rs1981707 22 15809384 0.0299685 0.0176768 0.527892 rs1981708 22 15809434 0.0305465 0.0187227 0.489512 rs11914222 22 15810040 0.0307183

Dear all, you can find below my solution for sliding a window. Please find below the code for the two alternatives and the benchmarks.     install.packages('caTools') require(caTools) do_sliding_for_a_window_duty_cycle <- function(DataToAnalyse,  windowSize) {   data<-DataToAnalyse   out <- numeric()   elements<- numeric()   if (length(data[,1]) >= windowSize){       for

Hello together, I'm looking for advice on how to do some tests on strings. What I want to do is the following: (just an example, real strings/sequence are about 200-400 characters long) given set of Strings: String1 abcdefgh String2 bcdefgop use a sliding window of size x to create an vector of all subsequences of size x found in the set (order matters! ). Now create, for every string

On Tue, Oct 20, 2015 at 04:40:09PM +0100, slim tabka wrote: > Hi everyone, > > I'm working with libguestfs 1.30.3 on Centos 7 host. > I encountered a problem when I wanted to install extlinux with guestfish as > a bootloader for my guests and I always get this error: > > SYSLINUX 4.05 EDD 0x54f93f16 Copyright (C) 1994-2010 H. Peter Anvin et al > ERROR: No

This allows us to be much more flexible about what commands can be used. It also means we do not need to encode any special behaviour for type or label parameters. --- plugins/tmpdisk/nbdkit-tmpdisk-plugin.pod | 91 +++++++++----- plugins/tmpdisk/tmpdisk.c | 147 ++++++++++++++-------- plugins/tmpdisk/default-command.sh.in | 6 + 3 files changed, 164 insertions(+), 80

This allows us to be much more flexible about what commands can be used. It also means we do not need to encode any special behaviour for type or label parameters. XXX However one problem which is not addressed here: The $disk passed to the shell script fragment must be updated, not replaced. This is because currently the plugin has a file descriptor opened on this file. If it is deleted by

v2 was here: https://www.redhat.com/archives/libguestfs/2020-March/msg00154.html v3: - Micro-optimize tmpdir. - Quote $disk in default command shell fragment. - Don't redirect mkfs output to /dev/null. Instead use exec </dev/null >/dev/null before the shell fragment. We may want to do this in other places where we run external shell scripts, or more generally for all

This creates filesystems on demand. A client simply connects with a desired export name and a new export is created. The export is persistent (until deleted by the server admin), and clients may disconnect and reconnect. In some respects this is similar to the nbdkit-tmpdisk-plugin, or nbdkit-file-plugin with the dir= option. --- plugins/ondemand/nbdkit-ondemand-plugin.pod | 190 ++++++

Neutral refactoring. Makes the code a bit easier to handle and simplifies future commits. --- plugins/tmpdisk/Makefile.am | 17 ++++++++- plugins/tmpdisk/tmpdisk.c | 22 +++--------- plugins/tmpdisk/default-command.sh.in | 51 +++++++++++++++++++++++++++ .gitignore | 1 + 4 files changed, 72 insertions(+), 19 deletions(-) diff --git

I’m pleased to announce the next stable release of nbdkit. This release concentrates on performance and fuzzing, along with numerous other enhancements (full list below). NBD — Network Block Device — is a protocol for accessing Block Devices (hard disks and disk-like things) over a Network. nbdkit is a toolkit for creating NBD servers. The key features are: * Multithreaded NBD server written

Hi all, I have a very large binary vector, I wish to calculate the number of 1's over sliding windows. this is my very slow function slide<-function(seq,window){ n<-length(seq)-window tot<-c() tot[1]<-sum(seq[1:window]) for (i in 2:n) { tot[i]<- tot[i-1]-seq[i-1]+seq[i] } return(tot) } this works well for for reasonably sized vectors. Does

This allows us to be much more flexible about what commands can be used. It also means we do not need to encode any special behaviour for type or label parameters. --- plugins/tmpdisk/nbdkit-tmpdisk-plugin.pod | 115 ++++++++++---- tests/Makefile.am | 2 + plugins/tmpdisk/tmpdisk.c | 184 ++++++++++++++++------ plugins/tmpdisk/default-command.sh.in |