similar to: Efficient way to subset rows in R for dataset with 10^7 columns

Oh, there are ways, but the constraining issue here is moving data (memory bandwidth), and data table is probably already the fastest mechanism for doing that. If you have a computer with four or more real cores you can try setting up a subset of the columns in each task and cbind the results afterward, but it will be hard to accomplish without making extra copies of the data. You are already

Hi volks, i have a question about the step() fkt. Is there a possibility to save the last model generated from this method. I have a loop and so i generate 100 different models with the step fkt and i want to know which model is the most common. CODE: ... missStep -> numeric(100) for (j in 1:100) { trainindex <- sample(c(1:462),300) train <- data[trainindex,] test <-

I have a very large binary matrix, stored as a big.matrix to conserve memory (it is over 2 gb otherwise - 5 million columns and 100 rows). r <- 100 c <- 10000 m4 <- matrix(sample(0:1,r*c, replace=TRUE),r,c) m4 <- cbind(m4, 1) m4 <- as.big.matrix(m4) I need to remove every column which has only one unique value (in this case, only 0s or only 1s). Because of the number of columns, I

This is the error then: error in prettyseq(1:ncol(out)) : could not find function "prettyseq" Eric Berger <ericjberger at gmail.com> schrieb am Fr., 14. Apr. 2023, 09:06: > What happens if you do the following? > > library(caret) > > ?caret::createDataPartition > > i.e. to confirm that caret is loaded, seek help on this function > > > On Fri, Apr

What happens if you do the following? > library(caret) > ?caret::createDataPartition i.e. to confirm that caret is loaded, seek help on this function On Fri, Apr 14, 2023 at 9:56?AM G?bor Malomsoki <gmalomsoki1980 at gmail.com> wrote: > Eric, > > Yes, i know, i am calling the package, but this is not working. > I saw a similar question in Stackoverflow, advising install

Or is there any similar function to split the dataframe to trainDF and testDF? G?bor Malomsoki <gmalomsoki1980 at gmail.com> schrieb am Fr., 14. Apr. 2023, 09:45: > > This is the error then: > error in prettyseq(1:ncol(out)) : could not find function "prettyseq" > > > > > Eric Berger <ericjberger at gmail.com> schrieb am Fr., 14. Apr. 2023, 09:06:

Eric, Yes, i know, i am calling the package, but this is not working. I saw a similar question in Stackoverflow, advising install package Rcpp, but this one i am unable to install. Eric Berger <ericjberger at gmail.com> schrieb am Fr., 14. Apr. 2023, 08:47: > You first have to load the package using the library command. > > library(caret) > > Then you can call

I have newly installed R, R-tools, RStudio, but still not working: library(caret)Lade n?tiges Paket: latticeError: Laden von Paket oder Namensraum f?r ?caret? in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): fehlgeschlagen Namensraum ?vctrs? 0.5.2 ist bereits geladen, aber >= 0.6.0 wird gefordert Error in createDataPartition(hypotezis_df$X, p = 0.75, list = FALSE, times

You should post the result of running sessionInfo(), and tell us how you installed R. Your installation seems very broken. Duncan Murdoch On 14/04/2023 3:45 a.m., G?bor Malomsoki wrote: > This is the error then: > error in prettyseq(1:ncol(out)) : could not find function "prettyseq" > > > > > Eric Berger <ericjberger at gmail.com> schrieb am Fr., 14.

So update the vctrs package to the latest version first before loading R-tools (or the caret package, specifically)? -- Bert On Sun, Apr 16, 2023 at 1:57?PM G?bor Malomsoki <gmalomsoki1980 at gmail.com> wrote: > > I have newly installed R, R-tools, RStudio, but still not working: > > library(caret)Lade n?tiges Paket: latticeError: Laden von Paket oder > Namensraum f?r

You first have to load the package using the library command. > library(caret) Then you can call createDataPartition. e.g. > data(oil) > createDataPartition(oilType,2) HTH, Eric On Fri, Apr 14, 2023 at 7:52?AM G?bor Malomsoki <gmalomsoki1980 at gmail.com> wrote: > Dear all, > When i try to use createDataPartition after calling package 'caret', i get > the

Many thanks Bert, now is ok, i did not know that "Namensraum" should mean a package Am So., 16. Apr. 2023 um 23:44 Uhr schrieb Bert Gunter < bgunter.4567 at gmail.com>: > So update the vctrs package to the latest version first before loading > R-tools (or the caret package, specifically)? > > -- Bert > > On Sun, Apr 16, 2023 at 1:57?PM G?bor Malomsoki >

Dear all, does anyone know how to define the structure of the required samples using function createDataPartition, meaning proportions of different types of variable in the partition? Smth like this for iris data: createDataPartition(y = c(setosa = .5, virginica = .3, versicolor = .2), times = 10, p = .7, list = FALSE) Thanks a lot for your help. Regards, Trafim [[alternative HTML version

Dear all, When i try to use createDataPartition after calling package 'caret', i get the message: "could not find function createDataPartition" I use: R-4.2.3 for Windows RStudio-2023.03.0-386 Do you have any experience with this failure? Thank you! Best regards Gabor [[alternative HTML version deleted]]

Hello, I'm trying to separate my dataset into 4 parts with the 4th one as the test dataset, and the other three to fit a model. I've been searching for the difference between these 2 functions in Caret package, but the most I can get is this-- A series of test/training partitions are created using createDataPartition while createResample creates one or more bootstrap samples.

Dear community I have a dataframe and want to split it into a learn and a test partition. However the learnset should be balanced, i.e. each class should have the same number of cases. I tried and searched a lot, without success so far. Maybe you can help? Some example code *# generate example data df <- data.frame(class = as.factor(sample(1:3, 20, replace = T)), var1 = rnorm(20,3), var2 =

I have carefully read the CARET documentation at: http://caret.r-forge.r-project.org/training.html, the vignettes, and everything is quite clear (the examples on the website help a lot!), but I am still a confused about the relationship between two arguments to trainControl: "method" "index" and the interplay between trainControl and the data splitting functions in caret

Dear Sir, I got a problem with my program. I would like to classify my data using bagging support vector machine ensemble. I split my data into training data and test data. For a given data sets TR(X), K replicated training data sets are first randomly generated by bootstrapping technique with replacement. Next, Support Vector Mechine (SVM) is applied for each bootstrap data sets. Finally, the

Greetings, I have been exploring the use of the caret package to conduct some plsda modeling. Previously, I have come across methods that result in a R2 and Q2 for the model. Using the 'iris' data set, I wanted to see if I could accomplish this with the caret package. I use the following code: library(caret) data(iris) #needed to convert to numeric in order to do regression #I

Hi Sacha, On second thought, perhaps this is more the direction that you want ... X2 = cbind(X_train,y_train) colnames(X2)[3] = "y" regr2<-randomForest(y~x1+x2, data=X2,maxnodes=10, ntree=10) regr regr2 #Make prediction predictions= predict(regr, X_test) predictions2= predict(regr2, X_test) HTH, Eric On Tue, May 9, 2023 at 6:40?AM Eric Berger <ericjberger at gmail.com>