similar to: Q2/R2 ratio in PLSDA

Hello, I would like to do a partial least square discriminant analysis (PLSDA) in R using the package "ropls" Which is in R available via the R command : source("https://bioconductor.org/biocLite.R") When I try to do a PLSDA using my own data. The impact of two genders (AP,C) on 5 compounds measured in persons (samples) should be illustrated. When I try to do a PLSDA I get

Hello, I would like to do a partial least square discriminant analysis (PLSDA) in R using the package "ropls" Which is in R available via the R command : source("https://bioconductor.org/biocLite.R") I try to do a PLSDA to illustrate the impact of two genders (AP,C) on 5 compounds measured in persons (samples) should be illustrated. When I try to do a PLSDA I get the warning

Hi. I was used to draw 2D plot to show distribution of my samples. It was very powerful in small samples. Recently , I handle a lot of type of samples as more 15. so, I want to use more dimention. I was used that I conduct plsda function and draw biplot, such as, p1=plsda(mw, sp) biplot(p1) How can I draw 3D graph with my data?? I don't know exactly numerical value each spot. please,

Hi, Is there any R package doing permutation/randomization test for PLS/PLSDA? I found some codes for MatLab, but I want to use R program. Thank you very much in advance. Kohkichi Hosoda

Greetings R users, I have been hoping someone would be familiar with this topic. I understand fully everything on this list is from the good graces of those who wish to help. Thanks to those who have helped in multiple circumstances. However, I wanted to post this question once more. I hope someone will read it and perhaps have some additional insight into what I may be able to do. Thank

Greetings R users, I have been working on running plsda and I would like to have the R2 and Q2 values. I know the function R2 from the 'pls' package will generate both R2 and Q2 but they are for each separate class. Is there a way to get the cumulative R2 and Q2 for the whole model? R2(pls.new, estimate="all") Response: B (Intercept) 1 comps 2 comps train

Hi, I know that this question has been asked many times but i can't find the correct solution from anywhere. I have 4 computer on the LAN connected as follow. comp1(WinXP)---------------------------------> hub1---->router comp2(winXP)---------------------------------> hub1---->router comp3(WinXP)wireless ---> access point----> hub1--->router comp4(CentOS

Hi ! I've used the example given in the documentation for the prcomp function both in R and SPAD to compare the results obtained. Surprisingly, I do not obtain the same results for the coordinates of the principal composantes with these two softwares. using USArrests data I obtain with R : > summary(prcomp(USArrests)) Importance of components: PC1 PC2

I've had reports lately about segfaults in the rgl package. I've only been able to reproduce these on Linux. I am not so familiar with C++ details, so I have a couple of questions way down below. But first some background info. One recipe to recreate the crash works with a new version 5.0-1 of the mixOmics package: > library(mixOmics) > example(pca) This crashes with

Dear List I am trying to fit a multinomial model using the mlogit package. Attempting to load the data into mlogit presents the following error. MLOG<-mlogit.data(Mult3,shape="long",choice="CHOICE",alt.var="mode.ids",indivs = "set3",chid.var = "obs") Error in `row.names<-.data.frame`(`*tmp*`, value = c("1.1", "1.2",

Hello, for my project I wanted to create a side-by-side barplot. For each of 143 treatments there are always two measurement. This two measurements (a pair) are represented by a red resp. a yellow bar. I was able to write the code for the side-by-side barplot. Unfortunately however I am not able to vary the distance between the measurement pairs ( the distance from one red-yellow bar pair to the

CRAN (and crantastic) updates this week New packages ------------ * apcluster (1.0.1) Ulrich Bodenhofer http://crantastic.org/packages/apcluster The apcluster package implements Frey's and Dueck's Affinity Propagation clustering in R. The algorithms are analogous to the Matlab code published by Frey and Dueck. * BioPhysConnectoR (1.6-1) Franziska Hoffgaard

Greetings, I have been exploring the use of the caret package to conduct some plsda modeling. Previously, I have come across methods that result in a R2 and Q2 for the model. Using the 'iris' data set, I wanted to see if I could accomplish this with the caret package. I use the following code: library(caret) data(iris) #needed to convert to numeric in order to do regression #I

New major versions of the caret packages (caret 3.37, caretLSF 1.23 and caretNWS 0.23) have been uploaded to CRAN. caret is a package for building and evaluating a wide variety of predictive models. There are functions for pre-processing, tuning models using resampling, visualizing the results, calculating performance and estimating variable importance. caretNWS and caretLSF are two parallel

New major versions of the caret packages (caret 3.37, caretLSF 1.23 and caretNWS 0.23) have been uploaded to CRAN. caret is a package for building and evaluating a wide variety of predictive models. There are functions for pre-processing, tuning models using resampling, visualizing the results, calculating performance and estimating variable importance. caretNWS and caretLSF are two parallel

Hi. I want to show easily classified samples in the one biplot. My samples have 14 types and each type have 21 samples So, I cannot understand distribution of samples after plsda. I want to give a color each types text in the graph. How can I do that? [[alternative HTML version deleted]]

New versions of the caret (3.08) and caretLSF (1.12) packages have been released. caret (short for "Classification And REgression Training") aims to simplify the model building process. The package has functions for data splitting, pre-processing and model tuning, as well as other miscellaneous functions. In the new versions: - The elasticnet and the lasso (from the enet package)

New versions of the caret (3.08) and caretLSF (1.12) packages have been released. caret (short for "Classification And REgression Training") aims to simplify the model building process. The package has functions for data splitting, pre-processing and model tuning, as well as other miscellaneous functions. In the new versions: - The elasticnet and the lasso (from the enet package)

Version 4.06 of the caret package was sent to CRAN. caret can be used to tune the parameters of predictive models using resampling, estimate variable importance and visualize the results. There are also various modeling and "helper" functions that can be useful for training models. caret has wrappers to over 50 different models for classification and regression. See the package

Version 4.06 of the caret package was sent to CRAN. caret can be used to tune the parameters of predictive models using resampling, estimate variable importance and visualize the results. There are also various modeling and "helper" functions that can be useful for training models. caret has wrappers to over 50 different models for classification and regression. See the package