similar to: Help with RDA analysis, function ''varpart'' in vegan

I am not familiar with the vegan package, so I am just making a guess here. If 'na.action=na.omit' is part of the call to varpart, try removing it from the function call and moving it above as follows: options(na.action="na.omit") RDA_Ger <- varpart(comm, x1, x2, x3, transfo="hellinger", scale = FALSE) Maybe that will help. Regards, Eric On Sat, Sep 16, 2017 at

Dear R-users I applied vegan's varpart function to partition the effects of explanatory matrices. Adj. R square for the unique fraction [a] is 0.25. Does anyone know why the decomposition by hand using rda gives me a different result for [a] (constrained proportion is 0.32)? I used cbind() for the conditional fractions, but it should be similar to condition()? Thanks very much

I am trying to find the percentage of the parameters explaining the bacterial community composition. I have one data matrix with relative abundance of OTUs and one with environmental parameters. I used varpart in vegan package but the values in the venn diagram is bigger than 100% in total.How is it possible? What might be the reason? Thank you library(vegan) gotud <-

Hi, I did a linear regression with 5 explanatory variables. Now, to see the contribution of each variable, I use varpart from vegan library. But varpart don?t accepts my 5 explanatory variables, it accept only 4. 1- How must I do to use my 5 explanatory variables? 2- Is it the sum of variance fraction of each variable must be equal to 1. Thanks for your help. Komine -- View this

The varpart function does not have na.action argument, and all undefined arguments are regarded as explanatory data sets X (they come after ?). Best wishes, Jari Oksnaen

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Hello I am using Jari Oksanen's CCA routine from the Vegan package on some estuary data, following a technique applied in (Anderson, M.J. & Gribble, N.A., 1998, Partitioning the variation among spatial, temporal and environmental components in a multivariate data set, Australian Journal of Ecology 23, 158-167). Some steps in the process require that the dependent matrix be constrained by

Hi, I am trying to run the command "forward.sel.par," however I receive the error message: "Error: could not find function 'simpleRDA2'." I have the vegan library loaded. The documentation on "varpart" has not helped me to understand why I cannot call this function. Maybe I am missing something obvious because I am still an 'R' novice. Below is a

Hi, I am using venn diagram function in AMDA to plot the venn diagram. But it seems in this function, it can only plot 3 or less vectors. Is there a way to plot the venn diagram with more than 3 vectors? Please help. Thanks. Z --------------------------------- [[alternative HTML version deleted]]

Hello, I am a total beginner with ?R? and found a package ?venn? to create a venn diagram. The problem is, I cannot create the vectors required for the diagram. The manual say: "R> venn(accession, libname, main = "All samples") where accession was a vector containing the codes identifying the RNA sequences, and libname was a vector containing the codes identifying the

I am attempting to use wine to run a windows application called VideoReDo. I'm getting an error when I try to install the program, however, and I don't know how to proceed. The error is: fixme:actctx:parse_depend_manifests Could not find dependent assembly L"Microsoft.VC80.CRT" If I ignore the error, I get a further error: err:seh:setup_exception_record stack overflow 896

Hi, I'm trying to configure a 4638 to pass inbound and outbound to and from ISDN and SIP interfaces. I'm using web interface at the moment. Setup is: ISDN -- <BRI> -- Patton 4638 -- <SIP> Asterisk -- <SIP> -- <IP Phone> I can call from IP phone but can't receive any incoming call : I can't see any SIP message coming in when a call comes in. Previously,

Hi, Changing the line bellow helped to get incoming calls but I add to remove secret= option in sip.conf (otherwise, Patton wouldn't respond to 407 Auth required challenges). If someone could enable secret and still get incoming calls (in any SmartWare 5.X), please, do not hesitate to share here ... interface sip IF-ASTERISK bind context sip-gateway ASTERISK route call dest-table

I am extremely new to RoR, I am. I am slowly but surely learning Ruby and the Rails concepts but the environment is confusing. I have an application that was written for my company in RoR. It is on a ubuntu server that is going to be shut down. I want to move the app to my two Macs (one Leopard and one Snow Leopard). We want to keep the app to demo a business concept but it can run locally