similar to: Preventing repeated package installation, or pre installing packages

On Mon, Oct 30, 2017 at 10:56 AM Tony Schreiner <anthony.schreiner at bc.edu> wrote: > On Mon, Oct 30, 2017 at 10:27 AM, Larry Martell <larry.martell at gmail.com> > wrote: > > > I have a R script that I am running from python with rpy2. On a debian > > system I run this: > > > > apt-get install R-cran-ggplot2 R-cran-caret > > > > And the

I have a R script that I am running from python with rpy2. On a debian system I run this: apt-get install R-cran-ggplot2 R-cran-caret And the script works. I want to move this to CentOS 7 system. There it cannot find R-cran-ggplot2 or R-cran-caret. Does anyone know what packages in CentOS 7 I need for dplyr, doBy, and ggplot2?

Dear Larry, Have a look at https://github.com/inbo/rstable That is a dockerfile with a stable version of R and a set of packages. Best regards, ir. Thierry Onkelinx Statisticus / Statistician Vlaamse Overheid / Government of Flanders INSTITUUT VOOR NATUUR- EN BOSONDERZOEK / RESEARCH INSTITUTE FOR NATURE AND FOREST Team Biometrie & Kwaliteitszorg / Team Biometrics & Quality Assurance

On Wed, Nov 29, 2017 at 11:14 AM, Rainer Krug <Rainer at krugs.de> wrote: > > > On 29 Nov 2017, at 15:28, Larry Martell <larry.martell at gmail.com> wrote: > > I have a R script that I call from python using rpy2. It uses dplyr, doBy, > and ggplot2. The script has install.packages commands for these 3 packages. > Even thought the packages are already installed it

> On 29 Nov 2017, at 15:28, Larry Martell <larry.martell at gmail.com> wrote: > > I have a R script that I call from python using rpy2. It uses dplyr, doBy, > and ggplot2. The script has install.packages commands for these 3 packages. > Even thought the packages are already installed it still downloads, > builds, and installs them, which is very time consuming. Is there a

On Wed, Nov 29, 2017 at 11:20 AM, Thierry Onkelinx <thierry.onkelinx at inbo.be> wrote: > Dear Larry, > > Have a look at https://github.com/inbo/rstable That is a dockerfile > with a stable version of R and a set of packages. Thank you very much. This is very useful to me. > 2017-11-29 15:28 GMT+01:00 Larry Martell <larry.martell at gmail.com>: >> I have a R

I need to install rpy2 on RHEL6. The version of R in the 6 repos is 3.0, and rpy2 does not work with that version. I installed R 3.3.3 following the directions here: https://oguya.ch/posts/2017-03-18-building-R-on-rhel-6/. But even with 3.3.3 it's still failing. Using pip it fails with: /usr/local/lib64/R/lib/libR.a(CommandLineArgs.o): could not read symbols: Bad value and installing from

> On Jul 20, 2017, at 7:53 AM, Larry Martell <larry.martell at gmail.com> wrote: > > I need to install rpy2 on RHEL6. The version of R in the 6 repos is > 3.0, and rpy2 does not work with that version. I installed R 3.3.3 > following the directions here: > https://oguya.ch/posts/2017-03-18-building-R-on-rhel-6/. But even with > 3.3.3 it's still failing. Using pip it

On Mon, Oct 2, 2017 at 5:29 PM, Stephen John Smoogen <smooge at gmail.com> wrote: > On 2 October 2017 at 17:21, Larry Martell <larry.martell at gmail.com> wrote: >> I an running CentOS7 in a docker container. I need to send email from >> that container so I installed sendmail and then I run: >> >> m4 /etc/mail/sendmail.mc > /etc/mail/sendmail.cf` and when

I an running CentOS7 in a docker container. I need to send email from that container so I installed sendmail and then I run: m4 /etc/mail/sendmail.mc > /etc/mail/sendmail.cf` and when I try and send mail it fails with: larry.martll at gmail.com... Connecting to [127.0.0.1] via relay... larry.martll at gmail.com... Deferred: Connection refused by [127.0.0.1] Anyone know how I can configure

Hello, I need a specific version of R installed for consistency reasons. I do the standard setup steps: echo "deb https://cran.ma.imperial.ac.uk/bin/linux/ubuntu trusty/" | sudo tee -a /etc/apt/sources.list sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9 sudo apt-get update And then a simple install call, which used to work just fine some time ago, tosses an

On Fri, Jul 21, 2017 at 11:39 AM, Tom Callaway <tcallawa at redhat.com> wrote: > On 07/21/2017 11:18 AM, Larry Martell wrote: >> I am trying to install R 3.4.0 on RHEL6. If I look here is it there: >> >> http://mirror.sjc02.svwh.net/fedora-epel/6/x86_64/ >> >> I did this: >> >> sudo subscription-manager repos --enable rhel-6-server-optional-rpms

You can install any R packages from CRAN using the ?"install.packages()" command form within R itself. This will download, compile, and install the packages into your personal user account. you might need to install some supporting *-devel RPM packages via "yum", but otherwise, it should work. --------------------------------------------------------------------------- Jason

On Mon, Oct 30, 2017 at 10:27 AM, Larry Martell <larry.martell at gmail.com> wrote: > I have a R script that I am running from python with rpy2. On a debian > system I run this: > > apt-get install R-cran-ggplot2 R-cran-caret > > And the script works. I want to move this to CentOS 7 system. There it > cannot find R-cran-ggplot2 or R-cran-caret. Does anyone know what

On Mon, Oct 2, 2017 at 6:26 PM Stephen John Smoogen > Sendmail is not the standard email server for EL7 What is the the standard email server?

On Mon, Oct 2, 2017 at 6:26 PM Stephen John Smoogen <smooge at gmail.com> wrote: > On 2 October 2017 at 18:03, Larry Martell <larry.martell at gmail.com> wrote: > > On Mon, Oct 2, 2017 at 5:29 PM, Stephen John Smoogen <smooge at gmail.com> > wrote: > >> On 2 October 2017 at 17:21, Larry Martell <larry.martell at gmail.com> > wrote: > >>>

I am working in a Dockerfile but there is a "secure" MariaDB server script I need to run which is interactive and I don't know how to deal with this. Basically this is the flow I have follow on the script at test environment and is the same I want to achieve in the Dockerfile without user interaction by just answering as you seen on the flow below: #

My dockerfile: FROM python:3 WORKDIR /usr/src/app COPY requirements.txt ./ COPY languageserver-master ./ COPY radian-master ./ RUN pip3 install --no-cache-dir -r requirements.txt EXPOSE 8080 RUN apt-key adv --keyserver keys.gnupg.net --recv-key 'E19F5F87128899B192B1A2C2AD5F960A256A04AF' RUN echo "deb http://cloud.r-project.org/bin/linux/debian buster-cran40/" >>

I continue to receive an error installing R via dockerfile on a buster image python:3. E: The value 'buster-cran40' is invalid for APT::Default-Release as such a release is not available in the sources My starting point is the debian buster based Python:3 image adding a couple of python specific configurations and then using the commands in the R project documentation for installing R on

>>>>> Jan Gorecki writes: > So the unique.default is from the R tools package during checks. > I don't see those issues on CRAN checks. I cannot reproduce this locally (and have no clues about docker). Perhaps you can try to debug this on your end? And see what env_list is when the error occurs? Best -k > Exact environment where I am reproducing this issue is a