similar to: Autologistic regression in R

Hi, I have spatially autocorrelated data (with a binary response variable and continuous predictor variables). I believe I need to do an autologistic model, does anyone know a method for doing this in R? Many thanks C Bell

Dear all, Could you pleas advise me on the following? I need to use general(ized) linear models (binomial distribution + logit link function) , to describe the preferred environment of each species (each sample is an individual in which I have measured several variables and also recorded the species it belongs to) However, must account for the spatial autrefoocorrelation between

Hello everyone, I have some binary, spatially autocorrelated data I would like to run autologistic regression on. I hope to incorporate both ordinary covariates (environmental predictors) and a spatial autocovariate in the model, ideally with a second-order neighbourhood structure. Since my computing skills are limited, I am wondering if anyone has composed an algorithm for this purpose, and

Hi all, I am trying to run an autologistic model using the function errorsarlm from spdep package. **I built an XY matrix extracting the two colums from matriz** coords1<-matriz[matriz$casos1==1, c(4,5)] coords1<-as.matrix(coords1) **I identify neighbours of region points** nb20<-dnearneigh(coords1,0,20,longlat=TRUE) ** I build a neighbours list with spatial weights**

The model should be class aov or lm and my model class is aovlist. tried tidy from broom library but did not work. To make it class aov, I had to remove the error term; model <- aov(Rotationdata_R$`GY(Mg/ha)`~Rep+code*as.factor(Nitrogen),data=Rotationdata_R) Ahmed Attia, Ph.D. Agronomist & Soil Scientist On Mon, Dec 25, 2017 at 7:38 PM, David Winsemius <dwinsemius at

Thanks. I found that, and installed it and got the same message. Here: RTools version 3.4 install.packages("fAsianOptions_3010.tar.gz", dependencies=TRUE, repos=NULL, type = "source") Installing package into ?C:/Users/Tlk7/Documents/R/win-library/3.4? (as ?lib? is unspecified) Warning: invalid package 'fAsianOptions_3010.tar.gz' Error: ERROR: no packages specified

Rtools is not available for the current version of R. What I'm looking for is an alternative package or how others have managed to create workarounds. On Thu, Nov 2, 2017 at 4:25 PM, David Winsemius <dwinsemius at comcast.net> wrote: > > > On Nov 2, 2017, at 1:09 PM, Tiby Kantrowitz <tlkantro at gmail.com> wrote: > > > > Yes, that is exactly what I was doing

> On Dec 8, 2017, at 4:48 PM, Ashta <sewashm at gmail.com> wrote: > > Hi David, Ista and all, > > I have one related question Within one group I want to keep records > conditionally. > example within > group A I want keep rows that have " x" values ranged between 15 and 30. > group B I want keep rows that have " x" values ranged

> On Apr 6, 2018, at 8:03 AM, David Winsemius <dwinsemius at comcast.net> wrote: > > >> On Apr 6, 2018, at 3:43 AM, g l <gnulinux at gmx.com> wrote: >> >>> Sent: Friday, April 06, 2018 at 5:55 AM >>> From: "David Winsemius" <dwinsemius at comcast.net> >>> >>> >>> Not correct. You already have

df is a data frame consisting of one variable (iso3 codes) such as USA RUS ARG BGD ITA FRA Some of these iso3 codes are repeated and I would like the corresponding continent name, the countrycode package does not seem to distinguish between North and South America. Thanks. Sincerely, Milu On Thu, Sep 7, 2017 at 9:00 PM, David Winsemius <dwinsemius at comcast.net> wrote: > > >

Yes, that is exactly what I was doing two days ago. Warning in install.packages : installation of package ?fAsianOptions_3010.79.tar.gz? had non-zero exit status Which is what a reading of the explanation for why "prob" was retired leads one to expect. Do you have some other suggestion about how to get it to work? I notice you're not using Windows which might have a relationship

> On Dec 6, 2017, at 4:27 PM, Ashta <sewashm at gmail.com> wrote: > > Thank you Ista! Worked fine. Here's another (possibly more direct in its logic?): DM[ !ave(DM$x, DM$GR, FUN= function(x) {!length(unique(x))==1}), ] GR x y 5 B 25 321 6 B 25 512 7 B 25 123 8 B 25 451 -- David > On Wed, Dec 6, 2017 at 5:59 PM, Ista Zahn <istazahn at gmail.com> wrote:

> On Nov 2, 2017, at 3:46 PM, Tiby Kantrowitz <tlkantro at gmail.com> wrote: > > Thanks. I found that, and installed it and got the same message. Here: > > RTools version 3.4 > > install.packages("fAsianOptions_3010.tar.gz", I don't see a path to that file's location. The expansion from pkg_version.tar.gz might be automatic, but I do generally

> On Dec 25, 2017, at 2:09 PM, Ahmed Attia <ahmedatia80 at gmail.com> wrote: > > The model should be class aov or lm and my model class is aovlist. > tried tidy from broom library but did not work. To make it class aov, > I had to remove the error term; > > model <- aov(Rotationdata_R$`GY(Mg/ha)`~Rep+code*as.factor(Nitrogen),data=Rotationdata_R) You seemed to have

Hi David, Ista and all, I have one related question Within one group I want to keep records conditionally. example within group A I want keep rows that have " x" values ranged between 15 and 30. group B I want keep rows that have " x" values ranged between 40 and 50. group C I want keep rows that have " x" values ranged between 60 and 75. DM <-

> On Nov 2, 2017, at 2:14 PM, Tiby Kantrowitz <tlkantro at gmail.com> wrote: > > Rtools is not available for the current version of R. Really? If true, I'm surprised and not able to help. I do see an Rtools34.exe at https://cran.r-project.org/bin/windows/Rtools/ -- David. > > What I'm looking for is an alternative package or how others have managed to create

Yes. That's the version I've been discussing that has non-zero exit status. That situation is why CRAN retired the prob package. It's possible you installed that library earlier in development and it's been "carried" along. It no longer installs, now. The problems with all of this seem to have started this month according to the conversations. However, no one has

Hello, >From an Excel file imported into R where each cell contains characters, I would like to convert some characters to numeric. However, my code doesn?t work. When I write data to worksheets in an Excel file, some numbers in the cells are stored as text (instead of numeric). Here is my code (the Excel file is attached): rm(list=ls(all=TRUE)) library(XLConnect) tab <-

> On Sep 7, 2017, at 12:21 PM, Miluji Sb <milujisb at gmail.com> wrote: > > df is a data frame consisting of one variable (iso3 codes) such as > > USA > RUS > ARG > BGD > ITA > FRA > > > Some of these iso3 codes are repeated and I would like the corresponding continent name, the countrycode package does not seem to distinguish between North and

> On Dec 8, 2017, at 6:16 PM, David Winsemius <dwinsemius at comcast.net> wrote: > > >> On Dec 8, 2017, at 4:48 PM, Ashta <sewashm at gmail.com> wrote: >> >> Hi David, Ista and all, >> >> I have one related question Within one group I want to keep records >> conditionally. >> example within >> group A I want keep rows that