similar to: Pathview xml issue

Hi R friends! I am stuck with a stupid question: I can circumvent it but I would like to understand why it is wrong. It would be nice if you could give me a hint... I have an 2D array d and do the following: ids <- which(d[,1]>0) then I have a vector gk with same column size as d and do: ids2 <- which(gk[ids]==1) but I can't interprete the result I get in ids2. I get the

Hi, I am trying to install R on the Unix system. When I type './configure', it seems many not installed on my computer. The last one is 'configure: error: No F77 compiler found'. Can you tell me where I can get these software before installing R? Thanks! Dawn [[alternative HTML version deleted]]

Hello all, I would like to introduce our group's new bioinformatics package to you: pathfindR <https://cran.r-project.org/package=pathfindR> This tool is designed to improve pathway enrichment analysis by firstly identifying active subnetworksin differential expression/methylation data using a protein-protein interaction network. It then performs pathway enrichment analysis

Hello all, I would like to introduce our group's new bioinformatics package to you: pathfindR <https://cran.r-project.org/package=pathfindR> This tool is designed to improve pathway enrichment analysis by firstly identifying active subnetworksin differential expression/methylation data using a protein-protein interaction network. It then performs pathway enrichment analysis

Hi. When we don't have too many IP addresses available and we want to run for example www server inside a jail, but use the same IP address as the main system, we need to actually use an internal IP address and forward http port with firewall from external IP to jail's IP. In that way we know that if somebody breaks into out jail, he cannot run sshd server (we have keys, I know) or any

Works fine for me. What do you object to in the following? Calling the above df "d", > dm <- as.matrix(d) > dm Sub_Pathways BMI_beta SAT_beta VAT_beta 1 "Alanine_and_Aspartate" " 0.23820" "-0.02409" " 0.94180" 2 "Alanine_and_Aspartate" "-0.31300" "-1.97510" "-2.22040" 3

Dear all; Thanks. Here are the dput results as Duncan suggested. Regards, Greg structure(list(Sub_Pathways = structure(c(3L, 3L, 3L, 3L, 3L), .Label = c("Acetylated_Peptides", "Advanced_Glycation_End-product", "Alanine_and_Aspartate", "Aminosugar", "Ascorbate_and_Aldarate", "Carnitine", "Ceramides", "Creatine",

Here are strace outputs per process. strace_output.22076 is the plugin's pid. (A little before forking) strace_output.22077 runs qemu-img strace_output.22078 is a mystery to me strace_output.22079 is rm -rf to the overlay image and its temporary dir. Best Regards, Peter On Wed, Nov 7, 2018 at 4:38 PM Richard W.M. Jones <rjones@redhat.com> wrote: > On Wed, Nov 07, 2018 at

Hi, I have calculated chi-square goodness of fit test,Sample coming from Poisson distribution. please copy this script in R & run the script The R script is as follows ########################## start ######################################### No_of_Frauds<- c(4,1,6,9,9,10,2,4,8,2,3,0,1,2,3,1,3,4,5,4,4,4,9,5,4,3,11,8,12,3,10,0,7) lambda<- mean(No_of_Frauds) # Chi-Squared

I've been working on a wrapper for LLVM's C++ API to use from Objective-C for a scripting language I'm working on. I currently have an issue with passing arguments to a function that takes a struct argument. typedef struct _test_struct { int x; int y; } test_struct; id testLLVMStructFuncCall(test_struct x) { NSLog(@"%d %d",x.x,x.y); return N(x.x + x.y); }

Dear R-help,   Chi Square Test for Goodness of Fit     Problem Faced :   I have got a discrete data as given below (R script)   No_of_Frauds <-c 1,1,1,1,1,1,1,1,1,2,1,1,1,1,1,1,2,1,2,2,2,1,1,2,1,1,1,1,4,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,5,1,2,1,1,1,1,1,1,1,3,2,1,1,1,2,1,1,2,1,1,1,1,1,2,1,3,1,2,1,2,14,2,1,1,38,3,3,2,44,1,4,1,4,1,2,2,1,3)   I am trying to fit

Dear R-help, ? ? Chi Square Test for Goodness of Fit ? I have got a discrete data as given below (R script) ? No_of_Frauds<-c(1,1,1,1,1,1,1,1,1,2,1,1,1,1,1,1,2,1,2,2,2,1,1,2,1,1,1,1,4,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,5,1,2,1,1,1,1,1,1,1,3,2,1,1,1,2,1,1,2,1,1,1,1,1,2,1,3,1,2,1,2,14,2,1,1,38,3,3,2,44,1,4,1,4,1,2,2,1,3) ? I am trying to fit Poisson distribution to

Chi Square Test for Goodness of Fit   I have got a discrete data as given below (R script)   No_of_Frauds<-c(1,1,1,1,1,1,1,1,1,2,1,1,1,1,1,1,2,1,2,2,2,1,1,2,1,1,1,1,4,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,5,1,2,1,1,1,1,1,1,1,3,2,1,1,1,2,1,1,2,1,1,1,1,1,2,1,3,1,2,1,2,14,2,1,1,38,3,3,2,44,1,4,1,4,1,2,2,1,3)   I am trying to fit Poisson distribution to this data using R.  

Dear R-help, ? ? Chi Square Test for Goodness of Fit ? I have got a discrete data as given below (R script) ? No_of_Frauds<-c(1,1,1,1,1,1,1,1,1,2,1,1,1,1,1,1,2,1,2,2,2,1,1,2,1,1,1,1,4,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,5,1,2,1,1,1,1,1,1,1,3,2,1,1,1,2,1,1,2,1,1,1,1,1,2,1,3,1,2,1,2,14,2,1,1,38,3,3,2,44,1,4,1,4,1,2,2,1,3) ? I am trying to fit Poisson

Hi all, This should be easy, but I can't seem to figure it out. I have a table like this named newtable a1 a2 a3 a4 Cnts Score 1 1 0 0 4 3.28 1 0 1 1 2 2.63 I want the following: a1 a2 a3 a4 Cnts Score 1 1 0 0 4 3.28 1 1 0 0 4 3.28 1 1 0 0 4 3.28 1 1 0 0

I am sorry to be bothering the list so much. I made a table of counts of flight arrivals by hour: cnts=tapply(Arrival4,list(Hour),table). There are up to 15 arrivals in a bin. > cnts $`0` 1 2 3 4 5 6 7 8 9 10 13 1 2 5 9 2 7 5 4 2 4 1 $`1` 1 2 3 4 3 2 2 1 $`2` 1 3 2 2 . . . My first problem is how to get this table filled in with the 0 slots. E.g., I want $`0` 1 2

Greetings all, I would like to append a 4 digit number suffix to the names of my files for later use. What I am using now only produces 1 or 2 or 3 or 4 digits. ############ for (i in 1:1000) { temp <- (kegg [i,]) temp <- merge (temp, subrichcdt, by="gene") file.name <- paste ("kegg.subrichcdt.", i, ".txt", sep="")

Respected Sir, With reference to my mail to you and the reply mail by you dated 9th and 16th January, 2013, I am sending the reproducible code in the attached document named " MODIFIED ANS ". I am also attaching the txt file named "hazModel", which is required to save in my documents folder to run the program. The file also contains the error message

i don't know perl,but on server site,they give soap:lite using perl , go to--->http://www.kegg.jp/kegg/soap/doc/keggapi_manual.html i want to download data from kegg server ,using R only, how to proceed? & what is mean by SOAP client driver ? also go to http://soap.genome.jp/KEGG.wsdl -- View this message in context:

My conception of how NAMESPACE and methods in R-2.7.0 resolved a generic 'func' to a func-method was to search as follows: In 2.7.0: func --> NAMESPACE, including Imports: (and other details) --> .GlobalEnv, and eventually Depends: since these are on search() In R-devel it seems like func --> NAMESPACE, including Imports: (and other details) --> ?? but not