similar to: Missing dependencies in pkg installs SOLVED

I had the same thought in the shower this morning but I was disappointed to find that SElinux was disabled on the system. My next step will be to install a previous version of R on the system. My problem is that I am planning a shiny server installation and at least half of the apps on the current system depend on these libraries that will not install. -- W. Michael Conklin EVP Marketing &

On 22/06/2017 5:02 PM, Conklin, Mike (GfK) wrote: > I am using debug on the .install_packages function...stepping through. Once the temporary folder is created and the tar file expanded I run file_test and get a FALSE back indicating that the configure file is not executable. I don't know what is causing this bug. Perhaps a Linux user can reproduce it and fix it. Here's what I see:

Duncan Murdoch writes: > On 22/06/2017 5:02 PM, Conklin, Mike (GfK) wrote: > > I am using debug on the .install_packages function...stepping through. Once the temporary folder is created and the tar file expanded I run file_test and get a FALSE back indicating that the configure file is not executable. > > I don't know what is causing this bug. Perhaps a Linux user can

I am using debug on the .install_packages function...stepping through. Once the temporary folder is created and the tar file expanded I run file_test and get a FALSE back indicating that the configure file is not executable. [1] "/tmp/RtmpMM6iC1/R.INSTALLc5ca415e4310/stringi" Browse[2]> dir(new) [1] "DESCRIPTION" "INSTALL" "LICENSE"

On 22/06/2017 3:42 PM, Conklin, Mike (GfK) wrote: > Not much progress..... I step through debug and it gets to the do.install() function which immediately errors with the same "configuration not executable" error. I believe that is a locally defined function, which means you can set a breakpoint within it but only if R is compiled with source info, or you can manually call

Not much progress..... I step through debug and it gets to the do.install() function which immediately errors with the same "configuration not executable" error. So, made a tempfunc that was a copy of tools:::.install_packages and edited the file_test("-x","configure") line to return a TRUE now I get a Permission Denied error (even if I run as root) >

On 22/06/2017 11:15 AM, Conklin, Mike (GfK) wrote: > Following Duncan's instructions I find that the system and R find that configure IS executable but if trying to install via install.packages I get the same error. > I also tried using R CMD INSTALL from the terminal and install.packages with a local file pointing to the very same tar.gz file that shows the executable bit set. All

The "configure exists but is not executable" problem is somewhat common on Windows, because there's usually no such thing as an executable bit there. (Cygwin does something to fake one, but Windows generally doesn't.) If you create a tarball there by default you get no executable bits marked in it. For a long time, R CMD build has dealt with this issue by using the

Following Duncan's instructions I find that the system and R find that configure IS executable but if trying to install via install.packages I get the same error. I also tried using R CMD INSTALL from the terminal and install.packages with a local file pointing to the very same tar.gz file that shows the executable bit set. All result in the same "configure is not executable" result.

> On Jun 21, 2017, at 1:39 PM, Conklin, Mike (GfK) <Mike.Conklin at gfk.com> wrote: > > I have a Ubuntu server with an R installation that has 384 packages installed. We are trying to replicate the system on a Red Hat Enterprise server. I downloaded the list of packages from the Ubuntu machine and read it into an R session on the new machine. Then I ran

>>>>> David Winsemius <dwinsemius at comcast.net> >>>>> on Wed, 21 Jun 2017 18:04:13 -0700 writes: >> On Jun 21, 2017, at 1:39 PM, Conklin, Mike (GfK) <Mike.Conklin at gfk.com> wrote: >> >> I have a Ubuntu server with an R installation that has 384 packages installed. We are trying to replicate the system on a Red Hat

I have a Ubuntu server with an R installation that has 384 packages installed. We are trying to replicate the system on a Red Hat Enterprise server. I downloaded the list of packages from the Ubuntu machine and read it into an R session on the new machine. Then I ran install.packages(listofpackages). Now I have 352 packages on the new machine but several very common packages (like much of the

I am trying to use a shiny app to update records in an sqlite database. I keep running into the following error: unable to find an inherited method for function 'dbSendQuery' for signature '"src_dbi", "character"' The query I am trying to send is: [1] "update kpquestions set mrisupercat = 'Demographics - Respondent' , set mricategory =

I am sure I am providing insufficient information, please ask for more. I installed R 2.14.2 on my Ubuntu laptop with and AMD64 processor and also installed RStudio and everything worked fine. Now, I tried to build R 2.15.1 from source and installed it using defaults. RStudio now complained that R was not built as a shared library. Went back and uninstalled, and configured with -enable-R-shlib

Hi, in my package, I've got a 'configure' file in the root, e.g. aroma.affymetrix/configure. (I've also got a configure.win, which works just fine on Windows). This file must be executable (has a proper file mode) for 'R CMD INSTALL'/install.packages() to work, otherwise one gets: * installing *source* package 'aroma.affymetrix' ... ERROR: 'configure'

Dear all, I am looking for a way to identify the row and column names of all elements within a matrix which fulfill some specified condition. Example: I have a correlation matrix of the following form: Y1 Y2 X1 0.4 0.3 X2 0.6 0.1 Suppose, I want to know which elements are smaller than 0.2, so the desired output should be something like: "X2 Y2" Thank you,

I am trying to write a modified function to plot an rpart object. By using getS3method I can see the plot and text code that I want to modify. Since I don't want to modify the package, I create a new function to plot the rpart object. The problem is that the original function calls many rpart specific functions that are only visible inside the rpart namespace. Therefore, when I call my

*Summary: * During package loading the library function calls file.info to determine if a file is a directory. This uselessly invokes getpwuid and getgrgid which can be expensive if the user/group database are held on a network. Note that file_test ALSO uses file.info for the same purpose Suggest rebuilding file_test to use ‘stat’ based call for directory search, and using file_test in

Hello all: I have searched through the help files and I have been unsuccessful in solving this problem. I am trying to create a small wrapper function that will go around a call to a plot function and create a windows metafile in the directory and also write the name of the file to a text file. The purpose is to efficiently bring a large number of plots into powerpoint. I am using

I am trying to create a dendrogram object to be able to display a multiway table. I understand how the dendrogram object is structured, a nested list of lists, but I am having trouble trying to create that structure from a table. Basically, what I would like to do is pass a multiway table, say table(a,b,c) to a function and have it display the table as a dendrogram. If a,b,c, and d are all