similar to: Missing dependencies in pkg installs

> On Jun 21, 2017, at 1:39 PM, Conklin, Mike (GfK) <Mike.Conklin at gfk.com> wrote: > > I have a Ubuntu server with an R installation that has 384 packages installed. We are trying to replicate the system on a Red Hat Enterprise server. I downloaded the list of packages from the Ubuntu machine and read it into an R session on the new machine. Then I ran

>>>>> David Winsemius <dwinsemius at comcast.net> >>>>> on Wed, 21 Jun 2017 18:04:13 -0700 writes: >> On Jun 21, 2017, at 1:39 PM, Conklin, Mike (GfK) <Mike.Conklin at gfk.com> wrote: >> >> I have a Ubuntu server with an R installation that has 384 packages installed. We are trying to replicate the system on a Red Hat

Following Duncan's instructions I find that the system and R find that configure IS executable but if trying to install via install.packages I get the same error. I also tried using R CMD INSTALL from the terminal and install.packages with a local file pointing to the very same tar.gz file that shows the executable bit set. All result in the same "configure is not executable" result.

The "configure exists but is not executable" problem is somewhat common on Windows, because there's usually no such thing as an executable bit there. (Cygwin does something to fake one, but Windows generally doesn't.) If you create a tarball there by default you get no executable bits marked in it. For a long time, R CMD build has dealt with this issue by using the

Not much progress..... I step through debug and it gets to the do.install() function which immediately errors with the same "configuration not executable" error. So, made a tempfunc that was a copy of tools:::.install_packages and edited the file_test("-x","configure") line to return a TRUE now I get a Permission Denied error (even if I run as root) >

On 22/06/2017 11:15 AM, Conklin, Mike (GfK) wrote: > Following Duncan's instructions I find that the system and R find that configure IS executable but if trying to install via install.packages I get the same error. > I also tried using R CMD INSTALL from the terminal and install.packages with a local file pointing to the very same tar.gz file that shows the executable bit set. All

On 22/06/2017 3:42 PM, Conklin, Mike (GfK) wrote: > Not much progress..... I step through debug and it gets to the do.install() function which immediately errors with the same "configuration not executable" error. I believe that is a locally defined function, which means you can set a breakpoint within it but only if R is compiled with source info, or you can manually call

I am using debug on the .install_packages function...stepping through. Once the temporary folder is created and the tar file expanded I run file_test and get a FALSE back indicating that the configure file is not executable. [1] "/tmp/RtmpMM6iC1/R.INSTALLc5ca415e4310/stringi" Browse[2]> dir(new) [1] "DESCRIPTION" "INSTALL" "LICENSE"

On 22/06/2017 5:02 PM, Conklin, Mike (GfK) wrote: > I am using debug on the .install_packages function...stepping through. Once the temporary folder is created and the tar file expanded I run file_test and get a FALSE back indicating that the configure file is not executable. I don't know what is causing this bug. Perhaps a Linux user can reproduce it and fix it. Here's what I see:

I had the same thought in the shower this morning but I was disappointed to find that SElinux was disabled on the system. My next step will be to install a previous version of R on the system. My problem is that I am planning a shiny server installation and at least half of the apps on the current system depend on these libraries that will not install. -- W. Michael Conklin EVP Marketing &

Duncan Murdoch writes: > On 22/06/2017 5:02 PM, Conklin, Mike (GfK) wrote: > > I am using debug on the .install_packages function...stepping through. Once the temporary folder is created and the tar file expanded I run file_test and get a FALSE back indicating that the configure file is not executable. > > I don't know what is causing this bug. Perhaps a Linux user can

Hola Carlos, el ubuntu tiene compilador :) Este es el error completo al querer instalar el paquete stringr Installing package into ?/home/jose210179/R/i686-pc-linux-gnu-library/3.2? (as ?lib? is unspecified) --2016-03-15 21:46:23-- https://cran.rstudio.com/src/contrib/stringr_1.0.0.tar.gz Resolviendo cran.rstudio.com (cran.rstudio.com)... 54.230.163.212 Conectando con cran.rstudio.com

I need some help understanding a problem running the tests on the 'digest' package. Initially, I got the message that the 'knitr' package was needed to run vignettes: Running vignettes for package ?digest? Error in loadVignetteBuilder(vigns$pkgdir) : vignette builder 'knitr' not found So I installed the knitr package and all its dependents (?mime?, ?stringi?,

On upgrading my F28 to F29, I've found that R-core and a number of R packages: R-evaluate R-glue R-highr R-knitr R-magrittr R-markdown R-mime R-stringi R-stringr R-yaml are installed, although I only ever install R from source and always keep my Rs locally. So I don't use Fedora R rpms, but these were installed without my command. Something in texlive is doing this. A remedy is to

Interesting, yesterday I had exactly this problem, but today I solved it (see the R-pkg-devel list) by _installing_ R-devel and > update.packages(checkBuilt = TRUE) I also tried it on Martin's Fedora 26 example below. Worked fine (had to install some packages...) On ubuntu 16.04. G?ran Brostr?m On 2017-12-06 11:29, Martin Maechler wrote: >>>>>> Pearce, Robert

I'm running Ubuntu 17.04 and R 3.4.1. I installed the latter yesterday, so I presume it's the latest version. I want to install Tidyverse, which I've spent many happy hours with under Windows. But when I do install.packages("tidyverse") , I get errors about unrecognized command line options to gcc. These start when the install hits the colorspace and munsell packages.

On Sat, 10 Nov 2018, I?aki Ucar wrote: > On Sat, 10 Nov 2018 at 15:17, Roger Bivand <Roger.Bivand at nhh.no> wrote: >> >> On upgrading my F28 to F29, I've found that R-core and a number of R >> packages: >> >> R-evaluate R-glue R-highr R-knitr R-magrittr R-markdown R-mime R-stringi >> R-stringr R-yaml >> >> are installed, although I

Buenas, he intentado varias veces instalar knitr y Rmarkdown tanto desde Rstudio como desde la terminal de Ubuntu usando diferentes codigos y en nunca consegui q lo instalara. el error q tira es el siguiente: Warning in install.packages : installation of package ?/tmp/RtmpavyTWw/downloaded_packages/stringr_1.0.0.tar.gz? had non-zero exit status Alguien me podria ayudar, porq estoy dejando

I am sure I am providing insufficient information, please ask for more. I installed R 2.14.2 on my Ubuntu laptop with and AMD64 processor and also installed RStudio and everything worked fine. Now, I tried to build R 2.15.1 from source and installed it using defaults. RStudio now complained that R was not built as a shared library. Went back and uninstalled, and configured with -enable-R-shlib

I am resubmitting this bug report but with additional information. I am running this with windows 10: w64-mingw32 with R Under development (unstable) (2017-12-04 r73829). I build 'httk' from the command prompt using 'R CMD build httk' after installing the required packages. Then when the vignettes are being created, it crashes. Today I installed the latest versions of Rtools,