similar to: Paths in knitr

Will there be anything wrong if you do not set these options? Regards, Yihui -- https://yihui.name On Mon, Jun 12, 2017 at 2:24 AM, <G.Maubach at weinwolf.de> wrote: > Hi Yihui, > Hi Duncan, > > I corrected my typo. Unfortunately knitr did not find my plots in the > directory where they reside which is different from the Rmd document. > > The documentation of knitr

Hi All, I have to compile a report for the management and decided to use RMarkdown and knitr. I compiled all needed plots (using separate R scripts) before compiling the report, thus all plots reside in my graphics directory. The RMarkdown report needs to access these files. I have defined ```{r setup, include = FALSE} knitr::opts_knit$set( echo = FALSE, xtable.type = "html",

I'd say it is an expert-only option. If you do not understand what it means, I strongly recommend you not to set it. Similarly, you set the root_dir option and I don't know why you did it, but it is a typo anyway (should be root.dir). Regards, Yihui -- https://yihui.name On Fri, Jun 9, 2017 at 4:50 AM, <G.Maubach at gmx.de> wrote: > Hi Yi, > > many thanks for your reply.

Hi Petr, Hi Jim, many thanks for your help. Today I constructed a sample dataset and tested your suggestions. Everything worked OK. Then I took the code and testet on the original data. And - it worked OK this morning also. I went back to my script of Thuesday and ran it again. OK. Then I used my script of Monday and ran it.. OK. I have no idea what was wrong yesterday. To see that there is

Hi your initial ds > str(ds) 'data.frame': 2 obs. of 3 variables: $ var1: num 1 1 $ var2: logi TRUE FALSE $ var3: logi NA NA first result > str(ds) 'data.frame': 2 obs. of 6 variables: $ var1 : num 1 1 $ var2 : logi TRUE FALSE $ var3 : logi NA NA $ value_and_logical: logi TRUE TRUE $ logical_and_na : logi TRUE NA

Hm Based on Jim's data your construction gives me correct result. > Umsatz_2011<-c(1,2,3,4,5,NA,7,8,NA,10) > Kunde_2011<-rep(0:1,5) > Check_Kunde_2011 <- ifelse(is.na(Umsatz_2011) == TRUE & Kunde_2011 == 1, 1, 0) > Check_Kunde_2011 <- factor(Check_Kunde_2011, levels = c(1,0), labels = c("Check", "OK")) > table(Check_Kunde_2011)

Hi All, I need to evaluate missing values in my data. I am able to filter these values and do simple statistics on it. But I do need new variables based on variables with missing values in my dataset: Check_Kunde_2011 <- ifelse(is.na(Umsatz_2011) == TRUE & Kunde_2011 == 1, 1, 0) Check_Kunde_2011 <- factor(Check_Kunde_2011, levels = c(1,0), labels = c("Check",

Hi All, I try to do a scatterplot for a bunch of variables. I plot a dependent variable against a bunch of independent variables: -- cut -- graphics::plot( v01_r01 ~ v08_01_up11, data = dataset, xlab = "Dependent", ylab = "Independent #1" ) -- cut -- It is tedious to repeat the statement for all independent variables. Found an alternative, i.e. : -- cut -- mu

Hi All, I would like to match some datasets. Both deliver variables AND cases which might or might not be present in all datasets: This sequence Kunden <- Kunden_2011 Kunden <- merge(Kunden, Kunden_2012, by.x = "Debitor", by.y = "Debitor") Kunden <- merge(Kunden, Kunden_2013, by.x = "Debitor", by.y = "Debitor")

Hi everyone, I am using package knitr, FIRST TIME. I don't have access to RStudio. Read through Yihui's page, didn't find it helpful. Stuck on terms Rnw, GFM (GitHub Flavored Markdown). Never used Sweave, so the reference is not helping. Is there a simple step-by-step example WITHOUT RStudio? My question: What is the procedure? The documentation explains the functions, but does

Hi, I have a function knit_expand() and its source/Rd are below: https://github.com/yihui/knitr/blob/master/R/template.R#L43-L44 https://github.com/yihui/knitr/blob/master/man/knit_expand.Rd When I run R CMD check on the package I get this warning (with both R 2.15.2 and R-devel): * checking for code/documentation mismatches ... WARNING Codoc mismatches from documentation object

I am working with Sweave and would like to print out into my latex document the result of the R command version$platform So what I first tried in my .Rnw document was \Sexpr{print(version$platform)}. However, the output from this command is the string "x86_64-apple-darwin10.8.0" (without the quotes). This contains an underscore, which is a special character in tex and so I get an error

Hi all, Using Beamer, in order to highlight a piece of R code I do something like this - note the "\structure" and "\alert" commands: \begin{semiverbatim} > mleOut <- \structure{dlmMLE}(Nile, + parm = c(0.2, 120), # initial values for optimizer + lower = c(1e-7, 0)) \alert<2>{# V must be positive} > mleOut$convergence

I have problems with very large numbers using knitr. In the following, my a and b are extremely small and ssrr and ssru are extremely large. Knitr delivers error messages. Scaling ssrr and ssru by 1000 resolved the problem: ssrr <-ssrr/1000 ; ssru<-ssru/1000 Any clue as to how I might resolve the problem? BTW, the same program does run in another computer. I am wondering whether my

Dear help list Does anybody know if it is possible to somehow tell R to let LaTeX handle the fonts for postscript plots produced by R? It is for a thesis and I have MANY figures. These are created by R scripts dynamically as the document is compiled, using the Make system. I see that I can `manually' specify the font family each time I call the postscript device, but I am looking for a

Hello List, while dealing with a questin of 'xiaodao' ( http://r.789695.n4.nabble.com/Problem-with-large-small-numbers-in-knitr-tp4653986.html) I noticed that copying the default inline hook function obtained by knit_hooks$get("inline") into a knit_hook$set(inline = <...>) call turns off exponential fomatting in the resulting .tex file. I used a stripped version of

In Section 1.4.2 of "Writing R Extensions" %\VignetteEngine{knitr::knitr} should be %\VignetteEngine{knitr::knit} > sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) Is this sort of thing best reported here, or is a huge report in order? John Maindonald email: john.maindonald at anu.edu.au phone : +61 2 (6125)3473 fax

On 18/12/2014, 12:17 AM, Yihui Xie wrote: > For the record, I saw a change had been made in R-devel: > https://github.com/wch/r-source/commit/d53b098 (Thanks, Duncan) > Meanwhile, I also made a change in knitr to assume UTF-8 unless R > passes an encoding to the vignette engine: > https://github.com/yihui/knitr/commit/23c6c8e2 Both will solve the > original problem, but

Dear R-listers, does anybody can suggest some manual where I can learn more about how the hooks in knitr work? I am trying to enclose the output of an R command in the Latex verbatim environment. I defined a hook as follows: knit_hooks$set(fsverb = function(x, options) { paste("\\begin(verbatim)\n", x, "\\end(verbatim)\n", sep = "") } then I set a chunk as

That is more or less what I had been doing for a long time (having both NEWS.md and NEWS), but decided not to do it any more last year. In fact, you can easily convert NEWS.md to a NEWS file that R's news() can understand, e.g. https://github.com/yihui/knitr/blob/947ad5fc94/Makefile#L8-L10 (if your NEWS.md is like this https://raw.githubusercontent.com/yihui/knitr/947ad5fc94/NEWS.md) I