similar to: efetch result not in character format

Displaying 20 results from an estimated 100 matches similar to: "efetch result not in character format"

2005 May 08
2
Extract just some fields from XML
Hello! I am trying to get specific fields from an XML document and I am totally puzzled. I hope someone can help me. # URL URL<-"http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&id=11877539,11822933,11871444&retmode=xml&rettype=citation" # download a XML file tmp <- xmlTreeParse(URL, isURL = TRUE) tmp <- xmlRoot(tmp) Now I want to extract only
2007 Dec 14
6
Analyzing Publications from Pubmed via XML
I would like to track in which journals articles about a particular disease are being published. Creating a pubmed search is trivial. The search provides data but obviously not as an R dataframe. I can get the search to export the data as an xml feed and the xml package seems to be able to read it. xmlTreeParse("
2005 Jun 14
1
protection stack overflow??
Hi dear Rers, I am using SSOAP package to access SOAP service at NCBI. I followed the example code in SSOAP but failed. > z <- .SOAP("http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/soap_adapter.cgi", method="run_eInfo", db="pubmed", action = I("einfo")) Error: protect(): protection stack overflow what's wrong? Thanks very much. Regards
2005 May 10
0
Fwd: Extract just some fields from XML]
Duncan, you are a king! Thanks a lot for this cookie. It really helped me. Thanks for the code as well as detailed explanation at the end. >Hi Gregor. > >Here is a function that will collect all of the nodes in the >XML document whose names are in the vector elementNames > >getElements = >function(elementNames) >{ > els = list() > > startElement = function(node,
2005 May 02
2
"Special" characters in URI
Hello! I am crossposting this to R-help and BioC, since it is relevant to both groups. I wrote a wrapper for Entrez search utility (link for this is provided bellow), which can add some new search functionality to existing code in Bioconductor's package 'annotate'*. http://eutils.ncbi.nlm.nih.gov/entrez/query/static/esearch_help.html Entrez search utuility returns a XML document
2010 Aug 19
3
mailbox utilities
Hello, Are there any utilities that will spit out statistics about some mailboxes I have on my server? For example, how many messages are in each mailbox? They appear to be in mbox format (default?). Thanks!
2006 Apr 10
24
Proposal of "Resizable" javascript library
Hi, All. I''ve developed the small javascript library to make the widgets "resizable". Please try attached file or following URL URL: http://221.112.61.214/~kzk/others/mixi/resizer.html Now I wish script.aculo.us developers to merge this into the "script.aculo.us". Is there any chance of merge? Is this a right place to ask this question? Thanks in advance. Kazuki
2012 Dec 11
1
query multiple terms in PubMed abstract
Hi: I am trying to search PubMed abstracts which contains BOTH two terms: COL4A1 AND Ocular. I am using the following code: url= "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?" search = paste(url, "db=pubmed&term=COL4A1+AND+Ocular[abstract]&retmax=300", sep="") docId <- xmlTreeParse(getURL(paste(url, search, sep="")),
2012 Dec 27
1
Conjunction and disjunction in pubmed query
Hi: I am trying to query pubmed abstracts using the following syntax: url= "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?" search = paste(url, "db=pubmed&term=", queryTerm1, "+AND+", queryTerm2,"+OR+",queryTerm3, "+OR+", queryTerm4, "[abstract]&retmax=100&usehistory=y", sep="") docId <-
2005 Oct 13
12
HFSC Advanced Limiting
I am investigating changing our broadband bandwidth control scripts over to HFSC. What I would like to accomplish is this: { * DOWNLOAD * I need a download class for each user (we''ll call it Class 1) that offers a minimum of lets say 384Kbps and a maximum of 1.5Mbps. The rates between 384Kbps and 1.5Mbps should be shared among all users. Each user should always be able to get at
2011 Jan 19
6
rake aborted! can't convert Hash into String
Hello, I encouter a problem when i try to do "rake db:migrate": rake aborted! can''t convert Hash into String Here is the trace result: ** Invoke db:migrate (first_time) ** Invoke environment (first_time) ** Execute environment rake aborted! can''t convert Hash into String /System/Library/Frameworks/Ruby.framework/Versions/1.8/usr/lib/ruby/1.8/fileutils.rb:1408:in
2016 Feb 11
2
inconsistency in treatment of USE.NAMES argument
Changing the vapply() behavior makes sense in principle. I analyzed the CRAN code base using the R parser and found 143 instances of calling vapply with USE.NAMES=FALSE. These would need to be inspected to understand the consequences of the change. For reference: /AzureML/R/datasets.R:226 /BBmisc/R/toRangeStr.R:33 /DBI/R/DBDriver.R:205 /Kmisc/R/str_rev.R:37 /Matrix/R/diagMatrix.R:98
2005 Aug 08
2
[LLVMdev] cfrontend building
Am Montag, 8. August 2005 18:12 schrieb Reid Spencer: > Stephan, > > I've seen this before. It happens when you do "make bootstrap" in llvm-gcc. > While "make bootstrap" is the correct way to build GCC, its not the correct > way to build llvm-gcc. > > Based on my experience with this, I suggest you completely erase your build > tree and then follow
2005 Aug 08
0
[LLVMdev] cfrontend building
Stephan, I've seen this before. It happens when you do "make bootstrap" in llvm-gcc. While "make bootstrap" is the correct way to build GCC, its not the correct way to build llvm-gcc. Based on my experience with this, I suggest you completely erase your build tree and then follow the CFEBuildInstr.html instructions *to the letter* with zero deviations. If you
2005 Aug 08
2
[LLVMdev] cfrontend building
Am Montag, 8. August 2005 04:15 schrieb Chris Lattner: > > I have never seen this, and don't really have any ideas. What configure > options did you use? Did you follow the directions here? > > http://llvm.cs.uiuc.edu/docs/CFEBuildInstrs.html > Yes I followed those instructions - almost. This is my configure line: ../src/configure --prefix=/usr --disable-threads
2016 Feb 08
2
inconsistency in treatment of USE.NAMES argument
Hi, Both vapply() and sapply() support the 'USE.NAMES' argument. According to the man page: USE.NAMES: logical; if ?TRUE? and if ?X? is character, use ?X? as ?names? for the result unless it had names already. But if 'X' has names already and 'USE.NAMES' is FALSE, it's not clear what will happen to the names. Are they going to propagate to the result
2006 Mar 22
11
yum failing
I have two Centos servers here..only one of them is having this issue. Resolving Dependencies --> Populating transaction set with selected packages. Please wait. ---> Downloading header for glibc to pack into transaction set. glibc-2.3.4-2.19.i686.rpm 100% |=========================| 118 kB 00:00 ---> Package glibc.i686 0:2.3.4-2.19 set to be updated ---> Downloading header for
2008 Sep 12
1
Echo Cancellation not working on WinCE
Hello Friends, I am trying to use speex-1.2beta3 version for echo cancelling. On my WinCE board I am using WaveIn/WaveOut functions to record and playback audio. I am receiving audio data on udp socket, then playing it on speaker using WaveOutWrite function. I registered callback to capture microphone data, then data chunk came from socket ( which I played on speaker) and data captured from
2004 Oct 04
1
[LLVMdev] cfrontend-1.3.source: Compilation error
This is a forward of a question from the SourceForge LLVM forum. If anyone has experience with Cygwin and building the C front-end there, please reply and CC Alex. --- Post by Alex Vinokur below --- =============== Windows 2000 GNU gcc 3.3.3 (cygwin special) =============== ./configure ./make I have got compilation error ------------------------------- make[1]: Entering directory
2011 Jun 29
0
XML parsing
Hi, i want to parse a XML-File. I made some Tutorial but with my special Format it don't work. An Example of my format: <?xml version="1.0" encoding="ISO-8859-1"?> <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml