similar to: Extracting sentences with combinations of target words/terms from cancer patient text medical records

Hi Bert, Thanks for your reply. It appears that I didn't replace the variable name "sampletxt" with the argument "x" in my function. I've corrected that and now my code seems to be working fine. Paul ________________________________ From: Bert Gunter <bgunter.4567 at gmail.com> Cc: R-help <r-help at r-project.org> Sent: Tuesday, July 11, 2017 2:00 PM

Hi Paul, Sounds like you have your answer, but for fun I thought I'd try solving your problem using only a regular expression query and base R. I believe this works: > txt <- "Patient had stage IV breast cancer. Nothing matches this sentence. Metastatic and breast match this sentence. French bike champion takes stage IV victory in Tour de France." > pattern <-

Have you looked at the CRAN Natural Language Processing Task View? If not, why not? If so, why were the resources described there inadequate? Bert On Jul 11, 2017 10:49 AM, "Paul Miller via R-help" <r-help at r-project.org> wrote: > Hello All, > > I need some help figuring out how to extract combinations of target > words/terms from cancer patient text medical

Hi Robert, Thank you for your reply. An attempt to solve this via a regular expression query is particularly helpful. Unfortunately, I don't have much time to play around with this just now. Ultimately though, I think I would like to implement a solution something along the lines of what you have done. I have a book on regular expressions that I am now starting to read. In the meantime, the

Hi Paul, No need to collapse the information into a single text string, gregexpr() can take a vector of strings (sentences in your case). You can split your sentences up, number them how you want, then search for your pattern either via regex or via these extra packages you use which probably use the PCRE regex library anyway. However, as this is basically what you did, I'm not sure why

List, Is there any way to specify the position of the legend from within the following code? If so, how can I do it. As it stands it in the bottom left corner and I want to move it to the top right. I'm not sure if I can use the default "plot" or if I need to go with the lattice package. Suggestions much appreciated. plot(y, xlab="Survival Time (Months)",

Hello, I want to use lme to fit two (or more) models, and then compare the fits on each individual. I know how to write my own code to do this (for each individual, plot the raw data, followed by lines() to plot each fitted curve) but I would like to use plot(augPred(... as it produces a nice trellis plot. I thought I could do this with par(new=T) but it does not seem to work.

I should hope that there is trouble, since "type III" is an undefined concept for a Cox model. Since SAS Inc fostered the cult of type III they have recently added it as an option for phreg, but I am not able to find any hints in the phreg documentation of what exactly they are doing when you invoke it. If you can unearth this information, then I will be happy to tell you whether

Dear list I would like to be able to group terms in a formula using a function that I will call tvar(), eg. the formula Y ~ 1 + tvar(x:A) + tvar(z) + u + tvar(B) + tvar(poly(v,3)) where x,u and v are numeric and A and B are factors - binary, say. As output, I want the model.matrix as if tvar had not been there at all. In addition, I would like to have information on the grouping, as a vector

Hallo Tk experts, the Tcl/Tk package allows to define very nice widgets for starting R functions, for printing results and for interactive parameter input. tkdensity.R and tkttest.R demonstrate this and both demos explain how some of the tk functions can be used. For constructing new widgets I would like to see further examples showing Tcl/Tk package in action. Therefore my question: Is there a

Hello Everybody, I'm trying to plot(x,y) using different colors. I have to cut (x,y) into sub intervals. And I want to plot this sub intervals using colors. But infortunally I don't know how to do this with R. Can any body help me please? My code is looking like : x<-c(tvar[1:t0],tvar[t0:(ts)],tvar[ts:n]) F<-c(var[1:t0],var[t0:(ts)],var[ts:n]) plot(x,F,xlab="Zeit

Dear R user, I have written a function which returns max,min and variation of a power (see below) Power is a given matrix(1,n) I call the function >Variation<-VAR(p,(n-deltat)) Now the problem is when I want plot(Results[1],Results[2]). Not possible! I become the following error (in english it means: Error in as.double.default(x) :Object cannot be transformed in double) >

Dear List: I have a data frame prepared in the couting process style for including a binary time-dependent covariate. The first few rows look like this. PtNo Start End Status Imp 1 1 0 608.0 0 0 2 2 0 513.0 0 0 3 2 513 887.0 0 1 4 3 0 57.0 0 0 5 3 57 604.0 0 1 6 4 0 150.0 1 0 The outcome

Dear R users, I have a problem since I try to plot my datas with different colors. plot(tvar, var, xlab="zeit [s]",ylab="Variation [%]", col = ifelse(var <= varstability, 'green','red')) this works well! But since I add a type="l" to my plot, it will color all the plot with green!!! Is there any solution? I avoid to use teachingDemos. Thanks. --

A non-text attachment was scrubbed... Name: rsync-ssl.patch Type: text/x-patch Size: 27004 bytes Desc: OpenSSL patch for rsync-cvs. Url : http://lists.samba.org/archive/rsync/attachments/20031012/b3ed1f7b/rsync-ssl.bin -------------- next part -------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Hi. I've been hacking together a way to use rsync with OpenSSL, and have attached my

https://bugzilla.samba.org/show_bug.cgi?id=1890 Summary: TLS for rsync protocol Product: rsync Version: 2.6.3 Platform: All URL: http://metastatic.org/source/rsync-ssl.patch OS/Version: Linux Status: NEW Severity: enhancement Priority: P3 Component: core AssignedTo: wayned@samba.org

Hi all, I have applied the patch at http://metastatic.org/source/rsync-ssl.patch to the rsync v2.6.2 tree, and have it installed between two hosts. Unfortunately the patch contains no docs, so I have no idea whether I've configured it correctly. Any attempt at making an rsync transfer bombs out with the error: [fma@chandler fma]$ rsync -a --ssl-ca-certs=/usr/share/ssl/certs/caCert.pem

Dear R users, I'm trying to write a function which returns minimum,maximum,mean of a vector(power) I've done the following : VAR<-function(power,length){ for(i in tml:length)){ tvar[i]<-i pmean[i]<-mean(power[i:i+deltat]) pmin[i]<-min(power[i:i+deltat]) pmax[i]<-max(power[i:i+deltat]) varmax[i]<-100*(pmax[i]-pmean[i])/pmean[i]

Hi, is anyone aware of estimation functions for threshold vector error correction / threshold cointegration models? I didn't find anything for R using RSeek or Google. Thanks a lot for any pointers, Werner __________________________________________________ Do You Yahoo!? hutz gegen Massenmails. http://mail.yahoo.com

Dear R-brains, I'm rather new to state-space models and would benefit from the extra confidence in using the excellent package sspir. In a one-factor model, If I am trying to do a simple regression where I assume the intercept is constant and the 'Beta' is changing, how do I do that? How do i Initialize the filter (i.e. what is appropriate to set m0, and C0 for the example below)?