similar to: Preventing repeated package installation, or pre installing packages

On Mon, Oct 30, 2017 at 10:56 AM Tony Schreiner <anthony.schreiner at bc.edu> wrote: > On Mon, Oct 30, 2017 at 10:27 AM, Larry Martell <larry.martell at gmail.com> > wrote: > > > I have a R script that I am running from python with rpy2. On a debian > > system I run this: > > > > apt-get install R-cran-ggplot2 R-cran-caret > > > > And the

I have a R script that I am running from python with rpy2. On a debian system I run this: apt-get install R-cran-ggplot2 R-cran-caret And the script works. I want to move this to CentOS 7 system. There it cannot find R-cran-ggplot2 or R-cran-caret. Does anyone know what packages in CentOS 7 I need for dplyr, doBy, and ggplot2?

Dear Larry, Have a look at https://github.com/inbo/rstable That is a dockerfile with a stable version of R and a set of packages. Best regards, ir. Thierry Onkelinx Statisticus / Statistician Vlaamse Overheid / Government of Flanders INSTITUUT VOOR NATUUR- EN BOSONDERZOEK / RESEARCH INSTITUTE FOR NATURE AND FOREST Team Biometrie & Kwaliteitszorg / Team Biometrics & Quality Assurance

On Wed, Nov 29, 2017 at 11:14 AM, Rainer Krug <Rainer at krugs.de> wrote: > > > On 29 Nov 2017, at 15:28, Larry Martell <larry.martell at gmail.com> wrote: > > I have a R script that I call from python using rpy2. It uses dplyr, doBy, > and ggplot2. The script has install.packages commands for these 3 packages. > Even thought the packages are already installed it

> On 29 Nov 2017, at 15:28, Larry Martell <larry.martell at gmail.com> wrote: > > I have a R script that I call from python using rpy2. It uses dplyr, doBy, > and ggplot2. The script has install.packages commands for these 3 packages. > Even thought the packages are already installed it still downloads, > builds, and installs them, which is very time consuming. Is there a

On Wed, Nov 29, 2017 at 11:20 AM, Thierry Onkelinx <thierry.onkelinx at inbo.be> wrote: > Dear Larry, > > Have a look at https://github.com/inbo/rstable That is a dockerfile > with a stable version of R and a set of packages. Thank you very much. This is very useful to me. > 2017-11-29 15:28 GMT+01:00 Larry Martell <larry.martell at gmail.com>: >> I have a R

I need to install rpy2 on RHEL6. The version of R in the 6 repos is 3.0, and rpy2 does not work with that version. I installed R 3.3.3 following the directions here: https://oguya.ch/posts/2017-03-18-building-R-on-rhel-6/. But even with 3.3.3 it's still failing. Using pip it fails with: /usr/local/lib64/R/lib/libR.a(CommandLineArgs.o): could not read symbols: Bad value and installing from

> On Jul 20, 2017, at 7:53 AM, Larry Martell <larry.martell at gmail.com> wrote: > > I need to install rpy2 on RHEL6. The version of R in the 6 repos is > 3.0, and rpy2 does not work with that version. I installed R 3.3.3 > following the directions here: > https://oguya.ch/posts/2017-03-18-building-R-on-rhel-6/. But even with > 3.3.3 it's still failing. Using pip it

On Mon, Oct 2, 2017 at 5:29 PM, Stephen John Smoogen <smooge at gmail.com> wrote: > On 2 October 2017 at 17:21, Larry Martell <larry.martell at gmail.com> wrote: >> I an running CentOS7 in a docker container. I need to send email from >> that container so I installed sendmail and then I run: >> >> m4 /etc/mail/sendmail.mc > /etc/mail/sendmail.cf` and when

I an running CentOS7 in a docker container. I need to send email from that container so I installed sendmail and then I run: m4 /etc/mail/sendmail.mc > /etc/mail/sendmail.cf` and when I try and send mail it fails with: larry.martll at gmail.com... Connecting to [127.0.0.1] via relay... larry.martll at gmail.com... Deferred: Connection refused by [127.0.0.1] Anyone know how I can configure

Don't you have to load BiocManager before using it? -----Original Message----- From: R-SIG-Debian <r-sig-debian-bounces at r-project.org> On Behalf Of Gerber, Lauren J Sent: Tuesday, October 15, 2024 9:15 AM To: r-sig-debian at r-project.org Cc: dirk at eddelbuettel.com Subject: Re: [R-sig-Debian] R Package: 'ggbreak' in Dockerfile Hi All, Does anyone have experience

Hello, I need a specific version of R installed for consistency reasons. I do the standard setup steps: echo "deb https://cran.ma.imperial.ac.uk/bin/linux/ubuntu trusty/" | sudo tee -a /etc/apt/sources.list sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9 sudo apt-get update And then a simple install call, which used to work just fine some time ago, tosses an

On Fri, Jul 21, 2017 at 11:39 AM, Tom Callaway <tcallawa at redhat.com> wrote: > On 07/21/2017 11:18 AM, Larry Martell wrote: >> I am trying to install R 3.4.0 on RHEL6. If I look here is it there: >> >> http://mirror.sjc02.svwh.net/fedora-epel/6/x86_64/ >> >> I did this: >> >> sudo subscription-manager repos --enable rhel-6-server-optional-rpms

Hi All, Does anyone have experience successfully installing and loading the R package ?ggbreak? in a Docker container? I ask because I have successfully used the ?ggbreak? package in a script outside the Docker container (on my local computer), but for some reason, I get the following error message when trying to load it using library(ggbreak) or library(?ggbreak?) inside the same script that

You can install any R packages from CRAN using the ?"install.packages()" command form within R itself. This will download, compile, and install the packages into your personal user account. you might need to install some supporting *-devel RPM packages via "yum", but otherwise, it should work. --------------------------------------------------------------------------- Jason

On Mon, Oct 30, 2017 at 10:27 AM, Larry Martell <larry.martell at gmail.com> wrote: > I have a R script that I am running from python with rpy2. On a debian > system I run this: > > apt-get install R-cran-ggplot2 R-cran-caret > > And the script works. I want to move this to CentOS 7 system. There it > cannot find R-cran-ggplot2 or R-cran-caret. Does anyone know what

On Mon, Oct 2, 2017 at 6:26 PM Stephen John Smoogen > Sendmail is not the standard email server for EL7 What is the the standard email server?

On Mon, Oct 2, 2017 at 6:26 PM Stephen John Smoogen <smooge at gmail.com> wrote: > On 2 October 2017 at 18:03, Larry Martell <larry.martell at gmail.com> wrote: > > On Mon, Oct 2, 2017 at 5:29 PM, Stephen John Smoogen <smooge at gmail.com> > wrote: > >> On 2 October 2017 at 17:21, Larry Martell <larry.martell at gmail.com> > wrote: > >>>

This should be an easy one. I'm trying to get postfix going. I've never done this before. I followed the directions at http://wiki.centos.org/HowTos/postfix. I opened port 25: iptables -I INPUT -p tcp -m tcp --dport 25 -j ACCEPT Here's an attempt to send mail: [motor at localhost motor]# mail -v larry.martell at gmail.com Subject: test test . EOT larry.martell at gmail.com...

On Fri, Sep 22, 2017 at 11:30 AM Stephen John Smoogen <smooge at gmail.com> wrote: > On 22 September 2017 at 10:33, Larry Martell <larry.martell at gmail.com> > wrote: > > I am trying to get a centos 6 system on the internet with a tethered > > iPhone. I can see the phone with lsusb as bus 001 device 011. A post on > > stackoverflow said I would need to run