similar to: Does this code execute the bagging correctly ?!

Hello, Is there a faster way to do this? Basically, I'd like to NA all values in all_data if there are no 1's in the same column of the other matrix, iu. Put another way, I want to replace values in the all_data columns if values in the same column in iu are all 0. This is pretty slow for me, but works: all_data = matrix(c(1:9),3,3) colnames(all_data) =

I have been trying to use R to gather some information from parsed log files (as part of examining some performance issues). I parsed the log files and put the data into an SQLite database, and then used RSQLite to load the data into R. The fields of interest are controller, action and total_time: controller and action have string values; total_time has a decimal value. I first did the

?s 11:46 de 16/04/2024, jing hua zhao escreveu: > Dear R-developers, > > I came to a somewhat unexpected behaviour of read.csv() which is trivial but worthwhile to note -- my data involves a protein named "1433E" but to save space I drop the quote so it becomes, > > Gene,SNP,prot,log10p > YWHAE,13:62129097_C_T,1433E,7.35 > YWHAE,4:72617557_T_TA,1433E,7.73 >

Hi there. I was wondering if somebody knows how to perform a bagging procedure on a classification tree without running the classifier with weights. Let me first explain why I need this and then give some details of what I have found out so far. I am thinking about implementing the bagging procedure in Matlab. Matlab has a simple classification tree function (in their Statistics toolbox) but

Gene names being misinterpreted by spreadsheet software (read.csv is no different) is a classic issue in bioinformatics. It seems like every practitioner ends up encountering this issue in due time. E.g. https://pubmed.ncbi.nlm.nih.gov/15214961/ https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1044-7 https://www.nature.com/articles/d41586-021-02211-4

Dear R-developers, I came to a somewhat unexpected behaviour of read.csv() which is trivial but worthwhile to note -- my data involves a protein named "1433E" but to save space I drop the quote so it becomes, Gene,SNP,prot,log10p YWHAE,13:62129097_C_T,1433E,7.35 YWHAE,4:72617557_T_TA,1433E,7.73 Both read.cv() and readr::read_csv() consider prot(ein) name as (possibly confused by

I am using bagging to perform Bagged Regression Trees on count data (bird abundance in Britain and Ireland, in relation to climate and land cover variables). Predictions from the final model are visually believable but I would really like a diagnostic equivalent to classification success that can be used to decide if a model is adequate. Whereas with classification data an error rate is returned,

Dear Sir, I am a R beginning user. I would like to apply the bagging algorithm to my data in order to classify a certain disease by Bagging Support Vector Machine Ensemble. My problem is that even if I am reading the book, looking at the examples in internet and available in R, learning a lot of theoretical things on about SVM esemble or Bagging method, I can't apply Bagged SVM esemble or

I'm having the most weird problem with bagging function. For some unknown reason it does not improve the classification (compared to rpart), but instead gives much worse results ! Running rpart on my data gives error rate of about 0.3 and bagging, instead of improving this results, gives error rate of 0.9 !!! I'm running both rpart and bagging with exactly the same parameters, I even

Hello! Does anyone know how to apply bagging for SVM? ( for example) I am using adabag package to execute bagging but this method, "bagging", works with classification trees. I would like to apply my bagging to other classifiers as SVM,RNA or KNN. Has anyone do it? Thanks!! [[alternative HTML version deleted]]

Hum... This boils down to > as.numeric("1.23e") [1] 1.23 > as.numeric("1.23e-") [1] 1.23 > as.numeric("1.23e+") [1] 1.23 which in turn comes from this code in src/main/util.c (function R_strtod) if (*p == 'e' || *p == 'E') { int expsign = 1; switch(*++p) { case '-': expsign = -1; case

I wanted to report this issue here so others may not find themselves alone and as the author is apparently active on the list. I havent done an exhaustive test by any means, cause I dont have time. But here's a small example. Apparently the "ns" argument is the one that is killing it. I've gotten several different segfault messages, the only other one I remember said "out

Your message seems unclear, and as evidence the respondents are giving various answers. You should provide a small sample of input and output data as it would look in R to avoid this kind of thrashing about. See [1][2][3] for guidance. Note that you also really need to figure out how to make sure your email program sends plain text, because HTML formatting WILL be stripped by the mailing list

Hello All, I have a data frame consisting of 4 columns (id1, id2, y, pred) where pred is the predicted value based on the glm function and my data frame is called "all". "data" is another data frame that has all data but I want to put together some important columns from my original data frame (data) into another data frame (all) as follows and I would like them to be sorted

Hi, I'm analysing some anthropometric data on fifty odd skull bases. We know the gender of each skull, and we are trying to develop a predictor to identify the sex of unknown skulls. Rpart with cross-validation produces two models - one of which predicts gender for Males well, and Females poorly, and the other does the opposite (Females well, and Males poorly). In both cases the error

Good morning all. I am doing bagging with package caret. I need bagging for a classification problem. I am working with " bag". bag(x, y, B = 10, vars = NULL, bagControl = bagControl(), ...) bagControl(fit = NULL, predict = NULL, aggregate = NULL, downSample = FALSE) My fit function is: svmFit <- function(x, y, ...) { library(e1071)

Hi, Is here anyone knows the difference between rapart and bagging when grow a CART tree? Thanks Qin

Dear Sir, I got a problem with my program. I would like to classify my data using bagging support vector machine ensemble. I split my data into training data and test data. For a given data sets TR(X), K replicated training data sets are first randomly generated by bootstrapping technique with replacement. Next, Support Vector Mechine (SVM) is applied for each bootstrap data sets. Finally, the

Dear sir, If I want to use bagging with SVM, which package should I choose?Thanks! Best wishes,Jie _________________________________________________________________ [[alternative HTML version deleted]]

Dear sir,I have a data set which name is "c78p",now I want to deal with it with bagging. % of data from c78p as training set is 50%,and number of bootstrap random samples with replacement from c78p is 5,use SVM in each run,can you help me to write the code?Thanks.Best regards,Jie _________________________________________________________________ [[alternative HTML version