Displaying 20 results from an estimated 400 matches similar to: "Head's up: Renviron change in R_LIBS_USER to 3.1"
2017 Jul 02
2
/etc/R/Renviron doesn't set R_LIBS_USER anymore
Hi
An upgrade to R 3.4.1 on Ubuntu removed the default setting of
R_LIBS_USER in /etc/R/Renviron. What's the rationale behind this? Thanks.
Best regards
Kirill
2017 Jul 03
0
/etc/R/Renviron doesn't set R_LIBS_USER anymore
On 2 July 2017 at 23:24, Kirill M?ller wrote:
| On 02.07.2017 22:01, Dirk Eddelbuettel wrote:
| > On 2 July 2017 at 21:39, Kirill M?ller wrote:
| > | Hi
| > |
| > | An upgrade to R 3.4.1 on Ubuntu removed the default setting of
| > | R_LIBS_USER in /etc/R/Renviron. What's the rationale behind this? Thanks.
| >
| > Pretty much exactly what I told you in person last week :)
2017 Jul 03
0
/etc/R/Renviron doesn't set R_LIBS_USER anymore
On 3 July 2017 at 13:05, Ramon Diaz-Uriarte wrote:
| If I might chime in, I'd like to add my vote to the "users should be able
| to use install.packages and should be able to install bioconductor
| packages with biocLite".
|
| Longer story
| ============
|
| Two cases (I've just faced this morning), where
| /usr/local/lib/R/site-library/ was not user-writeable:
|
| 1. Students
2017 Jul 03
1
/etc/R/Renviron doesn't set R_LIBS_USER anymore
On Mon, 03-07-2017, at 12:18:36, Dirk Eddelbuettel <edd at debian.org> wrote:
> On 3 July 2017 at 13:05, Ramon Diaz-Uriarte wrote:
> | If I might chime in, I'd like to add my vote to the "users should be able
> | to use install.packages and should be able to install bioconductor
> | packages with biocLite".
> |
> | Longer story
> | ============
> |
>
2017 Jul 03
1
/etc/R/Renviron doesn't set R_LIBS_USER anymore
On 2017-07-03 09:58, Dirk Eddelbuettel wrote:
> On 2 July 2017 at 23:24, Kirill M?ller wrote:
> | On 02.07.2017 22:01, Dirk Eddelbuettel wrote:
> | > On 2 July 2017 at 21:39, Kirill M?ller wrote:
> | > | Hi
> | > |
> | > | An upgrade to R 3.4.1 on Ubuntu removed the default setting of
> | > | R_LIBS_USER in /etc/R/Renviron. What's the rationale behind this?
2017 Jul 02
3
/etc/R/Renviron doesn't set R_LIBS_USER anymore
On 02.07.2017 22:01, Dirk Eddelbuettel wrote:
> On 2 July 2017 at 21:39, Kirill M?ller wrote:
> | Hi
> |
> | An upgrade to R 3.4.1 on Ubuntu removed the default setting of
> | R_LIBS_USER in /etc/R/Renviron. What's the rationale behind this? Thanks.
>
> Pretty much exactly what I told you in person last week :)
>
> - idea is to prefer /usr/local/lib/R/site-library/
2017 Jul 03
2
/etc/R/Renviron doesn't set R_LIBS_USER anymore
On Mon, 03-07-2017, at 07:58:41, Dirk Eddelbuettel <edd at debian.org> wrote:
> On 2 July 2017 at 23:24, Kirill M?ller wrote:
> | On 02.07.2017 22:01, Dirk Eddelbuettel wrote:
> | > On 2 July 2017 at 21:39, Kirill M?ller wrote:
> | > | Hi
> | > |
> | > | An upgrade to R 3.4.1 on Ubuntu removed the default setting of
> | > | R_LIBS_USER in /etc/R/Renviron.
2014 Apr 07
1
I am getting 3.1.0 beta instead of 3.0.3
When I use apt-get install r-base, I am getting the 3.1.0 beta instead of
3.0.3
I tried the install from three different mirrors with the same result:
## R repo
deb http://cran.stat.ucla.edu/bin/linux/ubuntu precise/
Setting up r-base (3.0.3.20140328-1precise0) ...
Setting up r-base-dev (3.0.3.20140328-1precise0) ...
Setting up r-base-html (3.0.3.20140328-1precise0) ...
root@UNew-SAS:~# R
R
2010 Feb 16
1
R_LIBS_USER bugs
Hi,
Having currently a big problem with R 2.10.1 vanilla (Solaris):
As soon as the R_LIBS_USER env var gets bigger than 1023 chars R
completely ignores it and uses the default:
> Sys.getenv('R_LIBS_USER');
R_LIBS_USER
"${R_LIBS_USER-~/R/i386-pc-solaris2.11-library/2.10}"
The strange thing is, if I set another envar to the same
2009 Oct 27
0
help.start() only recognizes forward slashes in R_LIBS_USER which is not the default case
I've found that the HTML help system started via help.start() requires
all forward slashes in R_LIBS_USER otherwise the Packages page is
corrupt/non-working. Note that by default R_LIBS_USER is set by R on
startup.
Example 1:
With R_LIBS_USER=C:/Users/JohnDoe/R/win-library/2.10
> help.start() [and go to "Packages"]
If nothing happens, you should open
2020 Mar 19
0
R CMD check --as-cran attempts to hide R_LIBS_USER but fails
On 18 March 2020 at 19:19, Henrik Bengtsson wrote:
| AFAIU, 'R CMD check --as-cran' tries to hide any site and user package
| libraries by setting R_LIBS_SITE and R_LIBS_USER. However, contrary
What makes you think that? AFAIK --as-cran just sets a bunch of the (nearly
countless) environment variables (all described in R Inst+Admin, as I recall)
to a set of values "close to"
2017 Sep 16
0
R_LIBS_USER not in libPaths
I'm not sure I follow what.the problem is. Are you trying to
set R_LIBS_USER but R does not acknowledge it, or do you observe something
in R that you didn't expect to be there and you are trying to figure out
why that is / where that happens?
Henrik
On Sep 16, 2017 07:10, "Rene J Suarez-Soto" <rene.j.suarez at gmail.com> wrote:
> I have a computer where R_LIBS_USER is
2008 Jun 18
0
problem with personal library (R_LIBS_USER) when R_LIBS is defined (patch)
As from R 2.5.0 users can install packages in their home directories, in
directory specified by the environment variable R_LIBS_USER. It's a
great feature.
But I have a problem with this feature, when R_LIBS is defined.
It works well the first time, when R creates the directory defined in
R_LIBS_USER.
> install.packages('BayesTree')
Warning in
2013 Jun 12
1
Windows R_LIBS_USER confusion under R-3.0.1
I would appreciate ideas about MS Windows install issues. I'm at our stats
summer camp and have been looking at a lot of Windows R installs and there
are some wrinkles about R_LIBS_USER.
On a clean Win7 or Win8 system, with R-3.0.1, we see the user library for
packages defaulting to $HOME/R/win-library.
I think that's awesome, the way it should be. Yea! But it does not appear
that way
2017 Sep 16
1
R_LIBS_USER not in libPaths
I have not intentionally set R_LIBS_USER. I looked for an Renviron.site
file but did not see it in R/etc or my home directory. The strange part is
that if I print Sud.getenv I see a value for R_LIBS_USER. However, this
directory is not showing under libPaths.
I though .libPaths should contain R_LIBS_USER.
I also noticed that R related variables are not in the system or user
variables because I
2017 Jul 03
3
R_LIBS_USER on Ubuntu 16.04
Dear all,
the recent update to R-3.4.1 kind of screwed the path to the libraries
installed on a user basis.
The previous version of the file /etc/R/Renviron had the following line
activated:
R_LIBS_USER=${R_LIBS_USER-'~/R/x86_64-pc-linux-gnu-library/3.4'}
This one is commented in the current one which means that the path to the
libraries installed previously is not found. I never
2023 Mar 17
1
Request: better default R_LIBS_USER
> Your best bet really to govern your .libPaths from your Rprofile.site and
Renviron.site ...
To do this for any version of R, one can add:
R_LIBS_USER=~/.local/share/R/%p-library/%v
to ~/.Renviron or the Renviron.site file. This automatically expands
to the platform and R x.y version early on when R starts up, e.g.
~/.local/share/R/x86_64-pc-linux-gnu-library/4.2.
> rather than asking a
2017 Jul 03
0
R_LIBS_USER on Ubuntu 16.04
On 3 July 2017 at 15:35, Stefan L?dtke wrote:
| the recent update to R-3.4.1 kind of screwed the path to the libraries
| installed on a user basis.
|
| The previous version of the file /etc/R/Renviron had the following line
| activated:
|
| R_LIBS_USER=${R_LIBS_USER-'~/R/x86_64-pc-linux-gnu-library/3.4'}
|
| This one is commented in the current one which means that the path to the
|
2023 Mar 16
1
Request: better default R_LIBS_USER
Hi,
I see R by default installs packages in ~/R. I know I can change the
default directory with R_LIBS_USER, but software shouldn't be
polluting the home directory.
For example both python and node install packages to ~/.local/lib,
ruby to ~/.local/share. They don't install to for example ~/node.
R should do the same: it should install packages to somewhere inside
~/.local by default.
2023 Mar 17
1
Request: better default R_LIBS_USER
On 16 March 2023 at 17:15, Henrik Bengtsson wrote:
| We're all starting out with a fresh R_LIBS_USER once a year when a new
| minor version of R is released,
Maybe not "we all". I don't, and I know other Linux users who don't force a
rebuild unless needed (as with R 3.6.* -> R 4.0.0).
R signals clearly when a rebuild is needed at a major version change, and we
had this