similar to: mpi.h errors on Mavericks packages

Dear all, I have a large dataset of randomly generated weighed sample for which I wish to compute a kernel density estimate. I have used the "np" package successfully for smaller datasets, however for the larger ones, they take too long when using the cross validation options for bandwidth selection ("cv.ls" or "cv.ml"). Of course, they are much quicker with

Howdy, I am having a problem with a library compiled from some legacy fortran code. I can call the library, it runs as it should, returns a list, and gives a ">" prompt, but then locks up the R session. Functions typed in return nothing. ctrl-c results in a new prompt that is still locked up, and R overwhelms the processor. This happens on Mac, Windows, and Linux exactly the same. I

I'm trying to help someone to troubleshoot possible OSX Yosemite issues, but I've only got access to OSX (< 10.9) so I cannot check myself. When building/installing binary R packages, there are different binaries depending on OSX version. For instance, CRAN provides different binaries for 'OS X Snow Leopard' and 'OS X Mavericks', e.g.

Dear List, I've realized that the "CRAN Checking Package" system returns some Warnings for my package TR8 under "r-release-osx-x86_64-mavericks"; all the warnings include the following message "Invalid MIT-MAGIC-COOKIE-1 key" which I find a little cryptic. After some web searches, I understood that "MIT-MAGIC-COOKIE" is related to the X server and

We run a dovecot mailserver. One of the clients I use is a Mac Laptop. Recently I upgraded from Mountain Lion (10.8) to Mavericks (10.9). Under 10.8 it worked fine. On 10.9 it syncs up when I invoke the client, but after a while stops getting updates. Most of my mail clients are on Linux (thunderbird) or Android (K9) and I admit that several run against my very large INBOX simultaneously. The

hello I maintain the gsl R package, and many users have recently reported that the package does not install from source under macosx 10.9 ("mavericks"). Users typically install the gnu GSL library and are able to compile and run a small "hello world" program which executes some of the Bessel functionality of the library; but under mavericks the configure script (which uses

Hi everybody! I have the next code which makes a reduction of the *a *variable in two slaves, using the Rmpi package. library(Rmpi) mpi.spawn.Rslaves(nslaves=2) reduc<-function(){ a<-mpi.comm.rank()+2 mpi.reduce(a,type=2, op="prod") return(paste("a=",a)) } mpi.bcast.Robj2slave(reduc) mpi.remote.exec(reduc()) cat("Product: ")

Hi everybody! I have the next code which makes a reduction of the *a *variable in two slaves, using the Rmpi package. library(Rmpi) mpi.spawn.Rslaves(nslaves=2) reduc<-function(){ a<-mpi.comm.rank()+2 mpi.reduce(a,type=2, op="prod") return(paste("a=",a)) } mpi.bcast.Robj2slave(reduc) mpi.remote.exec(reduc()) cat("Product: ")

Hi guys, we are running a fileserver for a company with ~10 Mac OS Mavericks (not all up to date). The Samba server is running on Centos 5 with official Samba from Centos. We see big big lagging while browsing the fileserver. Some directories du to the activy of the company contains more than 4000 files (small one). Everything is fine if we connect with Windows or Linux machine, but with Mac Os

Hello, I want to know does LLVM has support for MPI Programming Model? Can we do LLVM optimizations in MPI Programs? Regards -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.llvm.org/pipermail/llvm-dev/attachments/20161017/dd645f09/attachment.html>

Hi I am trying to utilize my dual core processor (and later a High-performance clusters (HPC) ) by using the Rmpi, snow, snowfall, ... packages, but I am struggling at the beginning, i.e. to initialise the "cluster" on my dual core computer. Whenever I try to initialize it (via sfInit(parallel=TRUE, cpus=2) or mpi.spawn.Rslaves(nslaves=2) ), I get an error message: >

I am running R 2.7.0 on a Suse 9.1 linux cluster with a job scheduler dispatching jobs and openmpi-1.0.1. I have tried running one of the examples at http://ace.acadiau.ca/math/ACMMaC/Rmpi/examples.html in Rmpi and they seem to be working, except mpi.close.Rslaves() hangs. The slaves are closed, but the master doesn't finish its script. Below is the example script and the call to R. The job is

Hi all: Can dtrace trouble-shoot the MPI porgrams (HPC programs)? Does there exist an extension on dtrace to debug MPI program? If exist, then where can I find the how-to documentations? Thanks in advance? Regards TJ -------------- next part -------------- An HTML attachment was scrubbed... URL:

I'm fairly astute at C and R but new to parallelization. Would someone be willing to provide help in the form of a simple example that parallelizes an R function from the inside of a C routine? If so, write me back at izmirlig at mail.nih.gov Thanks!

Hello, I plan to use R with my cluster with OpenMPI. I need the packaged 'snow' and 'Rmpi' for that, however, I get an error while downloading and installing them: When I do a: install.packages("Rmpi", dependencies=T) I get this error: checking for mpi.h... no Try to find libmpi.so or libmpich.a checking for main in -lmpi... no libmpi not found.

On FC10 with openmpi and mpich2 installed, the command "R CMD INSTALL Rmpi_0.5-7.tar.gz --configure-args=--with-mpi=/usr/lib64/openmpi" (or /usr/lib64/mpich2) fails with the error ''cannot find mpi.h". Doing a (s)locate indicates no header file labeled as such. Would appreciate any trailheads. TIA, V. -- Vince Fulco, CFA, CAIA 612.424.5477 (universal) vfulco1 at

Dear R-users, we are using library(snow) for computation on a linux cluster with RMPI. We have a problem with clusterEvalQ: after launching clusterEvalQ it seems loading the required library on each node but if we type a function belonging to the loaded package R doesn't find it. > library(snow) # making cluster with 3 nodes > cl <- makeCluster(3, type = "MPI") Loading

Dear I have been trying to a program which requires "nprmpi". However, I have tried to install the downloaded zip file but get the error: "cannot open compressed file ''npRmpi_0.40-7.tar.gz/DESCRIPTION''" I tried the command: install.packages("nprmpi") but get the message "package ''nprmpi'' is not available" I then

Hello, I thought that I should try openblas when building a CRAN package containing lots of old (twentieth century) C-code with frequent calls to blas and lapack routines. I have the following options on my Ubuntu 20.04 machine: Selection Path Priority Status ------------------------------------------------------------ * 0

Dear R Users, I am attempting to use snow with rmpi. My configuration is: - R Version 2.7.2, rmpi - RMPI 0.5-6 - DeinoMPI 1.1.0 - Windows Xp SP2 I can sucessfully create a cluster and execute simple commands but for some reason, I cannot change the working directory in my nodes. > noclusters<-2 > cl <- makeCluster(noclusters, type = "MPI") 2 slaves are spawned