similar to: R CMD check --as-cran does not show all error messages.

Hello, I'm using R code that includes a residual permutation that was written as a supplement to the paper: Turner et al. 2010. A general hypothesis-testing framework for stable isotopes ratios in ecological studies. Ecology 91:2227-2233. The supplemental code is available at: http://www.esapubs.org/archive/ecol/E091/157/suppl-1.htm When I execute the function, no warnings are given

Hi the list, I am writing a package in S4 and I do not manage to understand a bug. The "R CMD check" and the "R CMD build" both work. Here is links to the package (not on CRAN yet for the raison that I explain bellow): http://christophe.genolini.free.fr/aTelecharger/kml_0.5.zip http://christophe.genolini.free.fr/aTelecharger/kml_0.5.tar.gz Then I install the package and I

Hi the list, One of my package has a memory issue that I do not manage to understand. The Memtest notes is here: <http://www.stats.ox.ac.uk/pub/bdr/memtests/valgrind/kml-Ex.Rout> Here is the message that I get from Memtest --- 8< ---------------- ~ Fast KmL ~ ==27283== Invalid read of size 4 ==27283== at 0x10C5DF28: kml1 (kml.c:183) ... ==27283== by 0x10C5DE4F: kml1 (kml.c:151)

Dear all, I'm trying to use the Pspline add-on package to fit a quintic spline (norder =3), but I keep running into a Singularity error. > traj.spl <- smooth.Pspline(time, x, norder=3 ) Error in smooth.Pspline(time, x, norder = 3) : Singularity error in solving equations > Playing around with the other parameters produces an "unused arguments" error: > traj.spl

Hi the list, I am defining S4 objet. Is it possbile to define a method that change the slot of an object without using <- ? My object contain a numeric and a matrix. At some point, I would like to impute the missing value in the matrix. So I would like to use something like : ----------------- setClass("MyObj",representation(time="numeric",traj="matrix")) a

Hi the list. I try to learn the S4 programming. I find the wiki and several doc. But I still have few questions... 1. To define 'representation', we can use two syntax : - representation=list(temps = 'numeric',traj = 'matrix') - representation(temps = 'numeric',traj = 'matrix') Is there any difference ? 2. 'validityMethod' check the

Hi the list, I build a package. They was a mistake in it, but R CMD check did not find it. Is that normal ? Here is what Kurt gets (which is right, I did this mistake): --- 8< ---------------- * checking for code/documentation mismatches ... WARNING S4 class codoc mismatches from documentation object 'LongData-class': Slots for class 'LongData' Code: id other time traj

Hi all, There is a compatibility issue between the package 'lme4' and my package 'kml'. I define the "[" operator. It works just fine in my package (1). If I try to use the lme4 package, then it does no longer work (2). Moreover, it has some kind of strange behavior (3). Do you know what is wrong? Any idea of how I can correct that? Thanks for your help Christophe ---

Dear all, I have just uploaded to CRAN the version 1.4 of the package 'adehabitat'. Significant changes are listed below: - The eigenanalysis of selection ratios (Calenge and Dufour, 2006, Ecology) can now be performed using the function eisera(). It can be used for the analysis of habitat selection when habitat can be considered to consist of several habitat types (e.g.

Dear all, I have just uploaded to CRAN the version 1.4 of the package 'adehabitat'. Significant changes are listed below: - The eigenanalysis of selection ratios (Calenge and Dufour, 2006, Ecology) can now be performed using the function eisera(). It can be used for the analysis of habitat selection when habitat can be considered to consist of several habitat types (e.g.

Hi, I think I've found a bug in R CMD INSTALL. When it tries to parse a DESCRIPTION file with an invalid LazyData field, it errors out while trying to print the correct error message: > R CMD INSTALL . * installing to library ?/home/example/R/x86_64-pc-linux-gnu-library/3.4? * installing *source* package ?samplepackage? ... ** data Error in errmsg("invalid value of ", field,

K-means recluster data with given cluster centers Dear R user, I have several large data sets. Over time additional new data sets will be created. I want to cluster all the data in a similar/ identical way with the k-means algorithm. With the first data set I will find my cluster centers and save the cluster centers to a file [1]. This first data set is huge, it is guarantied that cluster

Dear developeRs, I've searched the documentation, FAQ, and mailing lists, but haven't found the answer(*) to the following: When should one specify LazyLoad, LazyData, and ZipData? And what is the default if they are left unspecified? (*)Except that 1) If the package you are writing uses the methods package, specify LazyLoad: yes, and 2) The optional ZipData field controls whether the

Hi, i create two constants kilo and milli in [1]. These should be available after loading library(sitools) How should i export them and what have i done wrong? (Other suggestions for improving the package are welcome too) The ready to use .tar.gz and the source can be found on github [2,3] kind regatds, [1] https://github.com/jonasstein/sitools/blob/master/init.R [2]

Hi, I'm trying to read some trajectory files (text files) which have the form: # trial n # t X Y 0 1 2 0.2 1 3 0.4 1.2 4 ... # trial n+1 # t X Y 0 1 2 0.2 1.3 3.3 0.4 1.5 5 ... ... where the symbol # means that the line is not a numeric value, but I still need to read the number of the trial (n=1, 2, etc.). I

Hi the list I have package foo0 with a big dataset 'myData'. In DESCRIPTION, if I use 'LazyData: no', then I get: - when I open a R session : memory used=20 908 - when I attach 'library(foo0)' : memory used=24364 - then I load the set 'data(myData)' : memory used=39 668 If I use LazyData: yes', then I get - when I open a R session : memory used=20 908

Hi all, I need a little help for construct an state's map on R. The first problem is to get the data. I have a datafile of longitude and latitude in the follow format: trajectory latitude longtude T -22.045618 -51.287056 T -22.067078 -51.265888 T -22.067039 -51.207249 T -22.059690 -48.089695 T -22.075529 -48.074608 T -22.072460 -48.044472 T -22.062767 -48.298473 T -22.077349

Hi the list, I build a package. They was a mistake in it, but R CMD check did not find it. Is that normal ? Here is what Kurt gets (which is right, I did this mistake): --- 8< ---------------- * checking for code/documentation mismatches ... WARNING S4 class codoc mismatches from documentation object 'LongData-class': Slots for class 'LongData' Code: id other time traj

Hi the list, I am the maintainer of the package kml. I quite often receive some email about a specific bug. The answer is always the same, I tell people to remove the package Matrix, and then kml works fine. I wonder what my code is not compatible with the Matrix package. Here is a (simplified) version of the kml code : --- 8< ------------ library(longitudinalData)

Dear all, I have just uploaded to CRAN the version 1.3 of the package 'adehabitat'. Significant changes are listed below: - Several functions allowing the conversion from and to classes of the package sp have been added. Maps of class "asc", "kasc", "area", as well as radio-monitoring of class "traj" can now be converted to the spatial