similar to: Re R CMD check checking in development version of R

Dear list, I have been checking my package ('analogue') using R2.13-0-alpha (details of exact svn version appended below) and the R CMD check procedure is generating an error rebuilding a vignette in the package, which raises a NOTE in the check. The log printed to screen during check shows: .... * checking re-building of vignettes ... NOTE Error in re-building vignettes: ... Error in

Dear all, I was looking for methods in R that allow assessing the number of significant principal coordinates. Unfortunatly I was not very successful. I expanded my search to the web and Current Contents, however, the information I found is very limited. Therefore, I tried to write code for doing a randomization. I would highly appriciate if somebody could comment on the following approach.

Dear List, I have been writing a Lattice function to draw what we call stratigraphic diagrams, these are diagrams with a panel for each species showing a time series of abundance, but drawn vertically to represent time passing from bottom of plot towards to top. I am most of the way there with this now, but I want to do away with the strip on each panel and instead draw a custom top axis with a

Hi: I do not know why the function decostand is not found in my vegan library, I have downloaded the package recently, and it seems to work well..Do you have any suggestion? Rosa. [[alternative HTML version deleted]]

Hii rstudio members I am learning rstudio, For my manuscript I am trying to plot CCA using species and environmental data. But I am getting error like Error in cca.default(sptrans, envtrans) : all row sums must be >0 in the community data matrix *My code is like * library(vegan) library(ggplot2) library(dplyr) rassspec<-read.csv("C:/Users/hp/Desktop/R_data/rassspec.csv",

Hello, I am relatively new to R and I am working through the code that is provided in the book Numerical Ecology with R and I have run across an error message that I can't seem to figure out. I am using the vegan, ade4, gclus and cluster packages. The code is as follows: # Ordered community table # Species are ordered by their weighted averages on site scores or <- vegemite(spe,

R version 3.2.2. library(vegan) I was to look at community tables from my dendrograms and am trying out the vegemite command. This is the error I get: Error in vegemite(apst, apst.clusters) : Cowardly refusing to use longer than 1 char symbols: Use scale I thought the problem was that I was using the log transformed data, but I tried it on the raw (which is single digit numbers), and still

Hi every body: I need some help with kendall.global. The example in the manual seems not working well, and cannot used with my data, always the same error. data(mite) > mite.hel <- decostand(mite, "hel") > > # Reproduce the results shown in Table 2 of Legendre (2005), a single group > mite.small <- mite.hel[c(4,9,14,22,31,34,45,53,61,69),c(13:15,23)] >

I am trying to find the percentage of the parameters explaining the bacterial community composition. I have one data matrix with relative abundance of OTUs and one with environmental parameters. I used varpart in vegan package but the values in the venn diagram is bigger than 100% in total.How is it possible? What might be the reason? Thank you library(vegan) gotud <-

Dear List, I have been experimenting with building packages from sources, having previously relied upon the binaries. I downloaded and installed all the tools suggested in http://www.stats.ox.ac.uk/pub/Rtools/ , including ActivePerl 5.6.1.631. I also downloaded the HTML Help workshop exe and installed it. During install though, a message popped up to say that I had a newer version of the

Dear all, In order to ease the transition from SPSS to R for some of my colleagues, I am trying to create a function which would show the variables and their labels (if those exist), using function "label" in package Hmisc. A toy example would be this: my.data <- data.frame(age=c(24,35,28), gender=c("Male", "Female", "Male")) require(Hmisc)

Dear all, I noticed that a data.frame has four attributes: - names - row.names - class - variable.labels While one can use the first three (i.e. names(foo) or class(foo)), the fourth one can only be used via: attributes(foo)$variable.labels (which is kind of a tedious thing to type) Is it or would be possible to simply use: variable.labels(foo) like the first three attributes? I tried: varlab

Hello, I am trying to read in elements out of a very large binary file ... the total file is 4 gigs. I want to select rows out of the file, and the current procedure I run works but is prohibitively slow (takes more than a day to run and still won't complete). Is there any faster way to accomplish this? My current procedure looks like this: readHH <- function(file_name,

Hi friends, i am using csv export on my application. in my view file code is <%- headers = ["Transaction ID", "Activity ID", "Product Name","Customer Name", "Ticket code"] -%> <%= CSV.generate_line(headers).strip %> <%if !@trans.nil? && @trans.length > 0 %> <% @trans.each do |tran|%> <% if

Dear R forum, Please refer to my query regarding "Error with function". I forgot to mention that I am using "plyr" library. Sorry for inconvenience. Regards Katherine --- On Tue, 23/4/13, Katherine Gobin <katherine_gobin@yahoo.com> wrote: From: Katherine Gobin <katherine_gobin@yahoo.com> Subject: [R] Error with function To: r-help@r-project.org Date:

Dear R forum, I have a data.frame as given below: df = data.frame(tran = c("tran1", "tran2", "tran3", "tran4"), tenor = c("2w", "1m", "7m", "3m"))  Also, I define libor_tenor_labels = as.character(c("o_n", "1w", "2w", "1m", "2m", "3m", "4m",

Hello, I am having a problem specifying the correlation structure in lme which leads to the error: Error in getCovariate.corSpatial(object, data = data) : Cannot have zero distances in "corSpatial". I have specified a grouping variable which is the only fix I could find by searching this error on R-help. ISee the below example. When my samples (tran) - which are transects

Dear R forum Please refer to my query captioned Error with function. I had missed in bracket ")" in the return statement and hence I was getting the error. I has struggled for more than 2 hours to find out the problem and only then has posted to the forum. I sincerely apologize to all for consuming your valuable time. Thanks for the efforts at your end. Regards Katherine --- On

I have numerous replicated goodness-of-fit experiments (observed compared to expected counts in categories) and these replicates are nested within a factor. The expected counts in each cell are external (from a scientific model being tested). The calculations I need within each level of the nesting factor are a heterogeneity G test, with the total G and the pooled G across replicates. Then I

After a little experimentation, I've come up with this: create a directory as a temp mount point (chmod 777) called /home.domainuser or something similar and assign the template homedir variable to it. This works for the first login, but I'm looking for advice on how I can rm -rf the whole thing to clean it up for the next user. Additionally, I noticed that it doesn't actually mount