Displaying 20 results from an estimated 9000 matches similar to: "Is the ISC license acceptable for CRAN?"
2009 May 13
2
Optimization algorithm to be applied to S4 classes - specifically sparse matrices
Hello.
I am trying to optimize a set of parameters using /optim/ in which the
actual function to be minimized contains matrix multiplication and is of
the form:
SUM ((A%*%X - B)^2)
where A is a matrix and X and B are vectors, with X as parameter vector.
This has worked well so far. Recently, I was given a data set A of size
360440 x 1173, which could not be handled as a normal matrix. I
2015 Mar 11
1
Notes on building a gcc toolchain for Rtools (but not multilib)
On Wed, Mar 11, 2015 at 1:23 PM, Hsiu-Khuern Tang <tangoh at gmail.com> wrote:
> On Tue, Mar 10, 2015 at 10:47 PM, Avraham Adler <avraham.adler at gmail.com> wrote:
>> On Wed, Mar 11, 2015 at 1:40 AM, Hsiu-Khuern Tang <tangoh at gmail.com> wrote:
>>> On Tue, Mar 10, 2015 at 8:54 PM, Avraham Adler <avraham.adler at gmail.com> wrote:
>>>>
2009 Jun 17
3
Matrix inversion-different answers from LAPACK and LINPACK
Hello.
I am trying to invert a matrix, and I am finding that I can get different
answers depending on whether I set LAPACK true or false using "qr". I had
understood that LAPACK is, in general more robust and faster than LINPACK,
so I am confused as to why I am getting what seems to be invalid answers.
The matrix is ostensibly the Hessian for a function I am optimizing. I want
to get
2015 Mar 11
2
Notes on building a gcc toolchain for Rtools (but not multilib)
On Wed, Mar 11, 2015 at 1:40 AM, Hsiu-Khuern Tang <tangoh at gmail.com> wrote:
> On Tue, Mar 10, 2015 at 8:54 PM, Avraham Adler <avraham.adler at gmail.com> wrote:
>>
>> I successfully rebuilt R-devel_2015-03-09 with the most recent version
>> of Rtools tonight, building both ICU_531 and this time libcurl (7.39)
>> as well (and OpenBLAS, of course). The
2015 Sep 01
2
Has the changelog for R-devel and R-patched moved?
On Tue, Sep 1, 2015 at 10:57 AM, peter dalgaard <pdalgd at gmail.com> wrote:
>
> On 01 Sep 2015, at 16:21 , Avraham Adler <avraham.adler at gmail.com> wrote:
>
>> Hello.
>>
>> There used to be changelog of sorts for R-devel [1] and R-release [2].
>> Neither have been updated since 2015-07-24. Have these moved
>> elsewhere, or are they no longer
2017 Jan 31
3
Unexpected EOF in R-patched_2017-01-30
On Tue, Jan 31, 2017 at 3:30 PM, peter dalgaard <pdalgd at gmail.com> wrote:
>
>> On 31 Jan 2017, at 18:56 , Avraham Adler <avraham.adler at gmail.com> wrote:
>>
>> Hello.
>>
>> When trying to unpack today's version of R-patched,
>
> From which source? The files from cran.r-project.org seems OK, both those in src/base-prerelease and those from
2023 Nov 14
1
Segmentation fault early in compilation of revision 85514
On Mon, Nov 13, 2023 at 12:45?PM Avraham Adler <avraham.adler at gmail.com> wrote:
>
> On Mon, Nov 13, 2023 at 1:13?AM Dirk Eddelbuettel <edd at debian.org> wrote:
> >
> >
> > Avi,
> >
> > Might be toolchain-dependent, might be options-dependent--it built fine here.
> > Easier for you to vary option two so maybe try that?
> >
> >
2020 Jan 19
2
rpois(9, 1e10)
On my Mac:
str(.Machine)
...
$ integer.max????????? : int 2147483647
?$ sizeof.long????????? : int 8
?$ sizeof.longlong????? : int 8
?$ sizeof.longdouble??? : int 16
?$ sizeof.pointer?????? : int 8
????? On a Windows 10 machine I have, $ sizeof.long : int 4; otherwise
the same as on my Mac.
????? Am I correct that $ sizeof.long = 4 means 4 bytes = 32 bits?
log2(.Machine$integer.max)
2020 Jan 19
2
rpois(9, 1e10)
On 2020-01-19 13:01, Avraham Adler wrote:
> Crazy thought, but being that a sum of Poissons is Poisson in the sum,
> can you break your ?big? simulation into the sum of a few smaller
> ones? Or is the order of magnitude difference just too great?
????? I don't perceive that as feasible.? Once I found what was
generating NAs, it was easy to code a function to return pseudo-random
2019 Mar 04
1
Problem with compiling OpenBLAS to work with R
>>>>> Erin Hodgess
>>>>> on Fri, 1 Mar 2019 12:30:35 -0700 writes:
> Yay! I re-installed everything and got through "Make
> distribution"! I have one more question, please: I am
> running the make check-all. I have an error at reg-1d.
> It stops the process. However, the mean difference (as
> per the file) is
2013 May 28
3
R-3.0.1 - "transient" make check failure in splines-EX.r
Hello.
I seem to be having the same problem that Paul had in the thread titled "[Rd] R 2.15.2 make check failure on 32-bit --with-blas="-lgoto2"" from October of last year <https://stat.ethz.ch/pipermail/r-devel/2012-October/065103.html> Unfortunately, that thread ended without an answer to his last question.
Briefly, I am trying to compile an Rblas for Windows NT 32bit
2024 Oct 31
1
Error compiling 87283 on Windows 10 using Rtools4.4 6335-6327
On 10/31/24 18:35, Avraham Adler wrote:
> On Thu, Oct 31, 2024 at 12:42?PM Tomas Kalibera
> <tomas.kalibera at gmail.com> wrote:
>> On 10/31/24 17:30, Avraham Adler wrote:
>>> When compiling R, the build fails after byte compiling grDevices with
>>> the following error:
>>>
>>> byte-compiling package 'grDevices'
>>> make[4]:
2020 Jan 20
2
[External] Re: rpois(9, 1e10)
Thanks to Luke and Avi for their comments.? I wrapped "round" around the
call to "rnorm" inside my "rpois.".? For "lambda" really big, that
"round" won't do anything.? However, it appears to give integers in
floating point representation that are larger than
.Machine$integer.max.? That sounds very much like what someone would
want.?
2013 Sep 30
2
R-3.0.2 - Win7_64 - alone_decoder.c: Permission denied error
Hello.
When trying to compile R-3.0.2 on Windows 7 64bit, I get an error relating to "alone_decoder.c: Permission denied." The entire error code is copied below.
gcc -std=gnu99 -m64 -shared -o Riconv.dll Riconv.def win_iconv.o
touch stamp
gcc -std=gnu99 -m64 -I../../include -I. -Iapi -DLZMA_API_STATIC -DHAVE_CONFIG_H
-DWIN32 -O3 -Wall -pedantic -march=core-avx-i -O3 --param
2017 Dec 17
1
OpenBLAS in everyday R?
Julia Programming Language uses also OpenBlas, and it is actively
maintained with bugs being fixed as I have checked it out:
http://www.openblas.net/Changelog.txt
So I still see it ok to be included as an options(...) feature (by default
off, just for safety), over other Blas libraries.
R could not use Intel MKL for legal reasons (I think), because as long that
R ships with GPL libraries,
2020 Jan 19
2
rpois(9, 1e10)
????? This issue arose for me in simulations to estimate confidence,
prediction, and tolerance intervals from glm(., family=poisson) fits
embedded in a BMA::bic.glm fit using a simulate.bic.glm function I added
to the development version of Ecfun, available at
"https://github.com/sbgraves237/Ecfun".? This is part of a vignette I'm
developing, available at
2017 Feb 17
1
Wish List: Extensions to the derivatives table
The issue is that without an extensible derivative table or the proposed extensions, it is not possible to automatically produce (without manual modification of the deriv3 output) a function that avoids catastrophic cancellation regardless of the working range.
Manual modification is not onerous as a one-time exercise, but can be time consuming when it must be done numerous times, for example
2018 Feb 09
3
R Compilation gets stuck on Windows 64
Hi Avraham,
What a coincidence, I have been following this post of yours:
https://www.avrahamadler.com/2013/10/24/an-openblas-based-rblas-for-windows-64-step-by-step/
Looks like this post is slightly older than what you have shared
previously. It is strange that you did not get the attachments. I am
pasting the contents of the MkRules.local here:
2018 Jan 09
2
OpenBLAS in everyday R?
Please pardon my ignorance, but doesn't OpenBLAS still not always play
nicely with multi-threaded OpenMP? (for example, don't race conditions
sometimes crop up)? If so, it might be nice to have the ability to
temporarily disable multi-threaded OpenMP (effectively:
omp_set_num_threads(1)) for the duration of operations using OpenBLAS.
Regards
Ben
> Julia using OpenBLAS is *very*
2012 May 09
1
Compiling R on Windows XP - Rgui crashes yet Rterm works
Hello.
I am trying to build R on Windows. It appears that my build passes the various "make checks" (unless I missed some error) and running Rterm seems to work fine whereas Rgui has an immediate error stating "
AppName: rgui.exe AppVer: 2.150.58871.0 ModName: rzlib.dll
ModVer: 0.0.0.0 Offset: 0000a9e5
The taskbar still works, but the console window has nothing in it, and