similar to: Error when compiling R with openblas

Hello, macosx 10.13.6, Rdevel r76458 I'm trying to compile against openblas to reproduce an error on the CRAN check page (my package is clean under winbuilder and all but one of the checks). I've downloaded and installed openblas 0.3.7 but I am not 100% sure that it is being used by R. Using ./configure --with-blas="-lopenblas" Then running R to discover the PID I get:

On Wed, 8 May 2019 at 04:52, Peter Langfelder <peter.langfelder at gmail.com> wrote: > > (CCing the R-devel list, maybe someone will have a better answer.) > > To be honest, I don't know how to. I wasn't able to configure R to use > OpenBLAS using the configure script and options on my Linux Fedora system. > I configure it without external BLAS, then replace the

Dear List, I am trying to build R on Fedora against a threaded openblas installed from Fedora's yum repos, or alternatively swap out libRblas.so with a threaded openblas built locally. I have installed $ yum list installed | grep openblas openblas.x86_64 0.2.11-1.fc20 @updates openblas-devel.x86_64 0.2.11-1.fc20 @updates

(CCing the R-devel list, maybe someone will have a better answer.) To be honest, I don't know how to. I wasn't able to configure R to use OpenBLAS using the configure script and options on my Linux Fedora system. I configure it without external BLAS, then replace the libRblas.dylib (.so in my case) with a link to the OpenBLAS dynamic link library. Peter On Tue, May 7, 2019 at 7:39 PM

Dear all, I am estimating a mixed-model in Ubuntu Raring (13.04¸ amd64), with the code: fm0 <- lme(rt ~ run + group * stim * cond, random=list( subj=pdSymm(~ 1 + run), subj=pdSymm(~ 0 + stim)), data=mydat1) When I check the approximate variance-covariance matrix, I get: > fm0$apVar [1] "Non-positive definite

Hello, the following is a part of a question asked on R-help. I realized that it is better suited for asking here. Apologies for the cross-posting! I'm on Ubuntu artful, and upgraded with 'apt'. Then ---------------------------------------------------------------- goran at M6800:~/src/R-3.4.3$ /usr/bin/R /usr/lib/R/bin/exec/R: symbol lookup error:

I’ve installed R 3.1 with the latest Fedora rpm (R-3.1.0-5.el6.x86_64.rpm) and I run into some issues with openblas. I’ve documented this with an open question on stack overflow here: http://stackoverflow.com/questions/24158372/openblas-r-3-1-and-fedora-centos-dist Basically before 3.1 I had 3.02 and I was able to install and use openblas following the instruction from official CRAN

Hello and apologies if this doesn't belong here. I'm trying to build a "portable" version of R - "portable" means that it could be easily moved to another location or machine simply by copying it. However, I encountered a problem when running it elsewhere: it seems that versions of dynamic libraries used by R are fixed and set at the build time; when that instance of R

Dear all Some computations gave a matrix. The single value decomposition of it worked fine previously, after an system upgrade I get the following error: ----- > La.svd(x,256,256) Error in La.svd(x, nu, nv) : BLAS/LAPACK routine 'DLASCL' gave error code -4 ----- Erroneous Matrix: ftp://usys-ftp.ethz.ch/ITES/STEP/nussbaum/R/matrix-lapack-error4.RData /.csv Operating System: Debian 8

R 3.5.1 is installed under Linux Mint 19 from binaries r-base and r-base-dev from ubuntu bionic-cran35.? Mysteriously, packages using libRblas cannot be compiled.? I get: libRblas.so: cannot open shared object file: No such file or directory.? And indeed, I find no libRblas.so. Any ideas about how to fix this? Thanks, Steve

On 08.05.19 09:34, I?aki Ucar wrote: > On Wed, 8 May 2019 at 04:52, Peter Langfelder > <peter.langfelder at gmail.com> wrote: >> >> (CCing the R-devel list, maybe someone will have a better answer.) >> >> To be honest, I don't know how to. I wasn't able to configure R to use >> OpenBLAS using the configure script and options on my Linux Fedora

Den 2017-12-01 kl. 20:24, skrev Dirk Eddelbuettel: > > On 1 December 2017 at 19:55, G?ran Brostr?m wrote: > | Hello, > | > | the following is a part of a question asked on R-help. I realized that > | it is better suited for asking here. Apologies for the cross-posting! > | > | I'm on Ubuntu artful, and upgraded with 'apt'. Then > | > |

Hi there, On 1 December 2017 at 23:24, G?ran Brostr?m wrote: | Dirk, | | thanks for your help. At work I have (ubuntu 16.04): | | ii libblas-common 3.6.0-2ubuntu2 amd64 Dependency package for | all BLAS implementations | ii libblas-dev 3.6.0-2ubuntu2 amd64 Basic Linear Algebra | Subroutines 3, static library | ii libblas3 3.6.0-2ubuntu2 amd64 Basic Linear

I run Fedora 22 R package. It is build with --with-lapack \ --with-blas \ --enable-R-shlib \. As the machine will act as a server with lots of R data computing, I try to optimize my R package. At first, I installed parallel_studio_xe_2016 with a free one year licence. Then, I build a package for R with Intel MKL and compiler. This took me lots of time as it was my first .rmp build. I finally

What do you have installed as far as libcurl goes? Would you mind listing your packages and greping for libcurl entries. Perhaps I need some libcurl debs installed when I install r-base? On Thu, Nov 5, 2015 at 11:34 AM, Dirk Eddelbuettel <edd at debian.org> wrote: > > On 5 November 2015 at 11:11, Michael Coyne wrote: > | Hello, > | > | I'm install R from a package off of

> | Is there a way to overcome this problem? Precompiled versions of R can be installed on various system configurations, so I guess that there should be a way to compile it in a version-agnostic manner. > > Yes, for example by > > -- using a Docker container which is portable across OSs (!!) and versions Docker R containers are north of 250 MB. I have checked experimentally

Hi all. How do I install Rstem on my mac os X, with Intel processor? I need Rstem in order to run de lsa package. When I run the following command in the R interface: install.packages("Rstem", repos = "http://www.omegahat.org/R", type = "source"), I get a whole bunch of errors, most of which referred to the dylib (see below). Is there an Rstem package

Executive summary: I believe revision 86265 makes it more difficult to build R with OpenBLAS on Windows as now the entire LAPACK needs to be built to obtain zspmv. Is there anything that can be done to allow the former behavior to be used, something in Mkrules.local perhaps? Detailed Explanation: I have been building R with OpenBLAS for Windows 64 for over a decade by patching

Hello, I thought that I should try openblas when building a CRAN package containing lots of old (twentieth century) C-code with frequent calls to blas and lapack routines. I have the following options on my Ubuntu 20.04 machine: Selection Path Priority Status ------------------------------------------------------------ * 0

Multi-threaded Math Libraries (Trough OpenBlas), taking into account that today's laptops have a minimum of 2-4 cores, are an important topic, and in my opinion, shall be included in R for the general interest. I think that the way to go would be to create a configuration setting in R's options(OpenBlas= TRUE|FALSE) which enables or disables OpenBlas in an easy way, which by default shall