similar to: R 3.1.0: 'R CMD Sweave' deletes non tex files created upon batch mode exit

On 15 Apr 2014, at 13:14 , Duncan Murdoch <murdoch.duncan at gmail.com> wrote: > On 14/04/2014, 10:23 AM, Marc Schwartz wrote: >> Hi Martin, >> >> Thanks for your confirmation on this. >> >> I normally do not use R CMD Sweave, as I too run under ESS in normal day to day operations. This finding was a quirk of having a particular Rnw document that I

Hi Martin, I use R CMD Sweave often as well, so thanks for looking into this. I have now tested some of my scripts with R-devel revision 65449 (2014-04-22) on 64-Bit Linux Mint 14. I can confirm Marc's report that running R CMD Sweave no longer deletes graphic files and retains created non-tex files (eps and/or pdf). What does not behave as before is the output printed to stdout, which

HI, I am working on R and Latex. R CMD Sweave Test.Rnw (this generates Rnw.Tex file ) R CMD pdflatex Test.tex (It generated Test.pdf) Is there any way to change the name of of output file (Test.pdf). I want it to pass the output file name as parameter. R CMD Sweave Test.Rnw Output_File R CMD pdflatex Output_File.tex So output file name will be Output_File.pdf Regards -- View

Hello List, I have been using Sweave for my homework this last quarter and have been very impressed at how much time and effort it saves me. I, however, have run up against a problem which I have not been able to solve using any of the Sweave/LaTeX tricks I know. I work through my homework one problem at a time, typesetting equations and writing R code, etc. and occasionally use

Suppose I have a Master.Rnw file that looks something like this: \documentclass[12pt]{mypaper} \usepackage[margin=1in]{geometry} \usepackage{setspace} \usepackage{url} \usepackage{indentfirst} \usepackage{fancyhdr} \usepackage{Sweave} \pagestyle{fancy} \lhead{sonographic rectal diameter and ADHD} \rhead{ } \usepackage{abbrevs} %\usepackage{natbib} %\usepackage{apacite}

Hi, I created a Sweave file (see below). when I want to convert tex file generated from it into pdf, I get error message as follows: > texi2dvi("test.tex", pdf=TRUE) Error in texi2dvi("test.tex", pdf = TRUE) : Running 'texi2dvi' on 'test.tex' failed. LaTeX errors: ! Undefined control sequence. l.8 \begin {Schunk} ? ! Interruption. !

I've noticed a change in behavior in R 2.12.0 from 2.11.1 regarding the treatment of absolute paths in the file argument of Sweave in a Windows environment. Consider the minimal Rnw file, attached and reproduced below my signature in case .Rnw files get stripped. This file is stored on my (Windows) computer in H:/My Documents. Using an absolute path with the standard window's

Dear guRus, I would like to loop over a medium amount of Sweave code, including both R and LaTeX chunks. Is there any way to do so? As an illustration, can I create a .tex file like this using a loop within a .Rnw file, where the "1,2,3" comes from some iteration variable in R? ################################################ \documentclass{article} \usepackage{Sweave} \begin{document}

Hi In the example .Rnw file below, only the newline between c and d is visible in the resulting .tex file after running R CMD Sweave. What is the reason for this behavior? Newlines are important in LaTeX and should be preserved. In particular, this behavior leads to incorrect LaTeX code generated when using tikz(console=TRUE) inside a Sweave chunk, as shown in the tikzDevice vignette. A

Dear list, I have tried to setup my Xemacs for use with Sweave, which I indend to learn. I have followed the instructions in the Sweave FAQ, that is to say, I put (defun Rnw-mode () (require 'ess-noweb) (noweb-mode) (if (fboundp 'R-mode) (setq noweb-default-code-mode 'R-mode))) (add-to-list 'auto-mode-alist '("\\.Rnw\\'" . Rnw-mode)) (add-to-list

Sorry, I forgot to include a reproducible example on my last e-mail but here it is: Since the file is large to be included here: The path to the foo.Rnw examples is: www.stat.umn.edu/~charlie/Sweave/foo.Rnw and is suppossed to produce a pdf like this one: http://www.stat.umn.edu/~charlie/Sweave/foo.pdf I have downloaded MiKTEX but I don't know how to make it work. Sweave and Stangle seem to

Let's say I have written the following tiny .Rnw file: _________________________________________ \documentclass{article} \usepackage[utf8]{inputenc} \usepackage{Sweave} \usepackage{tikz} \usepackage{pgf} \begin{document} <<>>= sessionInfo() @ \end{document} _________________________________________ I then can go to R and use sweave to translate the .Rnw file into a .tex

Dear HelpeRs, I'm very fond of Sweave and I use it as often as possible. It'a a pity I can't use it for larger projects or can I? For instance suppose I have three files file1.rnw, file2.rnw and file3.rnw with Sweave code. Working on file2.rnw I whould like to exclude file1.rnw and file3.rnw temporarily and joining all of them later. This amounts to a mechanism similar to using

Hello, I have the following makefile. The problem is that the bibliography doesn t work. Any help would be appreciated! I really don t don t what to do..:-( # The sources of the report (tex, Rnw and other files (e.g. bib, idx)) TEX_CMPS = Report problem RNW_CMPS = prop1 prop2 ExeExps OTHER = Report.bib # The name of the report to produce all: Report.pdf code: $(RNW_CMPS:=.R) clean: rm

Hi list, I need to process a Rnw file and and a csv file (both are encoded in UTF-8) under Windows XP (R Version 2.11.0, i386, mingw32). I can source and run the Rnw file: > Stangle("Bericht.Rnw") Writing to file Bericht.R > source(file("Bericht.R", encoding="UTF-8")) which runs fine, but running Sweave() failed: > Sweave("Bericht.Rnw")

Dear R-specialists, I am trying to create a Makefile that will first convert all my .Rnw files into .tex files and then, that will run the LaTeX compiler to produce a pdf document. This issue has been discussed before. Hence, I've basically adapted a Makefile I found at http://n4.nabble.com/R-Sweave-R-and-complex-latex-projects-td810020.html#a810023 to make it compatible with a Windows

Hello Does anybody have experience with Sweave run from Kile? I'm trying to make it run but have problems and don't know if the instructions are false or I do something wrong (my knowledge in bash and shell is too low to understand it)... I discovered recently Sweave and wanted to run it from my latex editor, Kile. I found and followed these instructions: > If you want to be able

Hello, I'm still trying to make the life of my colleagues easier. Nice, isn't it ? At the moment, I'm looking for a way to generate multiple "single report". In fact I have a .rnw file which send a query to a MySQL database (rs<-dbSendQuery(con, statement="select * from treatdata where name='Device1'") But of course my colleagues have many devices and

This is great. Thank you for your help, but let me make sure I fully understand. Here is the looping file I use to subset the data frame, create a tex file, and Sweave it. This results in N number of tex files where N is equal to the number of rows in the data frame. list <- unique(wide$stuid) master = "master.tex" for (i in list){ tmp1 <- subset(wide, stuid==i) tmp2

Hello It seems that sweave always runs in the global environment. I want to run sweave from within a function, and pass a variable into sweave, however when I do this, sweave doesn't see the variable. Here's my example test_sweave.Rnw file |% \documentclass[a4paper]{article} \usepackage[OT1]{fontenc} \usepackage{Sweave} \begin{document} \title{Test Sweave Document} \author{Paul