similar to: valgrind and C++

Hi, I ran R (version 2.9.0) CMD build under root in Fedora (9). When it tried to remove "junk files" it removed EVERYTHING in my local account! (See below). Can anyone tell me what happened, and even more importantly if I can I restore what was lost. Panickingly, Jarrod [jarrod at localhost AManal]$ R CMD build MCMCglmm_2.05 * checking for file

Hi, I ran R (version 2.9.0) CMD build under root in Fedora (9). When it tried to remove "junk files" it removed EVERYTHING in my local account! (See below). Can anyone tell me what happened, and even more importantly if I can I restore what was lost. Panickingly, Jarrod [jarrod at localhost AManal]$ R CMD build MCMCglmm_2.05 * checking for file

Hi, I ran R (version 2.9.0) CMD build under root in Fedora (9). When it tried to remove "junk files" it removed EVERYTHING in my local account! (See below). Can anyone tell me what happened, and even more importantly if I can I restore what was lost. Panickingly, Jarrod [jarrod at localhost AManal]$ R CMD build MCMCglmm_2.05 * checking for file 'MCMCglmm_2.05/DESCRIPTION'

Hi, Thanks in advance for any help on this question. I'm running multinomial models using the MCMCglmm package. The models have 5 outcome variables (each with count data), and an additional two random effects built into the models. The issue is that when I use the following code, the summary only gives me results for four of the outcome variables. Here is the code for my model: m3.random

> On Mar 22, 2018, at 1:31 PM, Michelle Kline <michelle.ann.kline at gmail.com> wrote: > > Hi, > > Thanks in advance for any help on this question. I'm running multinomial > models using the MCMCglmm package. The models have 5 outcome variables > (each with count data), and an additional two random effects built into the > models. The issue is that when I use

Hi David, Thanks for your comment. I haven't posted the data because they are unpublished and include human subjects so there are issues with sharing on a list serv, but I thought perhaps someone had encountered a similar problem and would already know the answer. I will reconsider whether my University's ethics approval would allow me to post the data and update the question if I think

Hi R-users: Can anyone give an example of giving starting values for MCMCglmm? I can't find any anywhere. I have 1 random effect (physicians, and there are 50 of them) and family="ordinal"? How can I specify starting values for my fixed effects? It doesn't seem to have the option to do so. Thanks, Ping

Dear R developers I am running an instrumented build of R 2.6.1 on ubuntu, compiled with option configure --with-valgrind-instrumentation=3. If run valgrind R then I get all sorts of warnings. I was wondering whether I should worry about them or not. First, when I open R as follows: $R -d "valgrind --tool=memcheck --leak-check=full --show-reachable=yes" --vanilla I get a whole

Valgrind (without gctorture) reports memory misuse: % R --debugger=valgrind --debugger-args="--leak-check=full --num-callers=18" ... > x <- 1:200000 > y <- rep(letters[1:5], length(x) / 5L) > for (i in 1:1000) { + # x[y == 'a'] <- x[y == 'b'] + x <- `[<-`(x, y == 'a', x[y == 'b']) + cat(i, '') + } 1 2 3 4 5 6 7 8 9 10

I have ran under valgrind memcheck the process using libLLVM-2.9.so (rev.126022) and got several errors: ==24227== Invalid read of size 1 ==24227== at 0x40274C9: memcpy (mc_replace_strmem.c:497) ==24227== by 0x40D5B84: char* std::string::_S_construct<char const*>(char const*, char const*, std::allocator<char> const&, std::forward_iterator_tag) (in

Hay! Has anyone come across these errors using valgrind for the oggenc tool or the encoder_example.c: ==13108== Invalid read of size 4 ==13108== at 0x4155734: _vp_offset_and_mix (in /usr/local/lib/libvorbis.so.0.4.1) ==13108==

This looks like the result of including a C++ system header inside an extern "C" block. There is no evidence of this happening in the current version 2.22.1. However, it did happen in the previous version 2.22 via the chain of inclusions: MCMCglmmcc.h -> cs.h -> R.h -> various C++ system headers See Writing R Extensions P 108. I would check that the people reporting this bug

Hi Samba developer people, I still have a problem were winbindd panics every time I run it. I'd hoped this might get fixed as newer releases of Samba came out, but I'm now running 3.0.2pre1 and still the same problem. I want to deploy Samba on Solaris, but was unable to successfully get samba to compile with dmalloc support, so I've had to install onto RedHat 8 and use valgrind

Hi All, The data set that I have is a cluster data, and I want to run a HLM mixed model with multi-level response. Here is my data set: response: - Level (num: 1, 2, 3, 4, 5 - 5 levels) Covariates: - Type (Factor: A, B, C - 3 levels) - yr (num: 2006, 2007, ...) - Male (num: 0=not Male, 1=Male - 2 levels) - Ethnicity (Factor: A, B, H, ..., - 7 levels) - ELL (num: 0, 1, - 2

Hi, I have fitted a generalized linear mixed effects model using lmer (library lme4), and the family = quasibinomial. I have tried to obtain a MCMC sample, but on calling mcmcsamp(model1, 1000) I get the following error which I don't understand at all: Error in .local(object, n, verbose, ...) : Update not yet written traceback() delivers: 4: .Call(mer_MCMCsamp, ans, object) 3:

Dovecot list, 1) I downloaded latest dovecot and pigeonhole tar balls and extracted on latest updated CentOS 7 : dovecot-2.3.2.1.tar.gz and dovecot-2.3-pigeonhole-0.5.2.tar.gz 2) I moved pigeonhole (dovecot-2.3-pigeonhole-0.5.2) directory into dovecot (dovecot-2.3.2.1) directory 3) built dovecot with following config and paramerters: patch -p1 <

Dear all, I would like to add mixed effects in a multinomial model and I am trying to use MCMCglmm for that. The main problem I face: my data set consits of a trapping data set, where the observation at eah trap (1 or 0 for each species) have been aggregated per traplines. Therefore we have a proportion of presence/absence for each species per trapline. ex: ID_line mesh habitat Apsy Mygl

On 2 Dec 2018, at 22.22, Guillaume via dovecot <dovecot at dovecot.org> wrote: > > I also have this kind of segfault since the update : > > Dec 2 21:12:11 xxxxxxx dovecot: auth-worker: Error: *** Error in `dovecot/auth': double free or corruption (fasttop): 0x000055573bb99f70 Is this easy to reproduce? Can you try with valgrind? It will slow down the logins a bit though.

Hello, KWD crashes almost regularly when trying to start OpenOffice.org. I've attached two output files from valgrind to this e-mail (as suggested by David Reveman in another mail 11.7): Use something like: valgrind --tool=memcheck kde-window-decorator .... I'm using Trevino's git version of Compiz in up-to-date Kubuntu Feisty system. Compiz version is

A full example with dovecot debug symbols activated (note since I have activate valgrind, no more segfault it?s normal I presume ): Dec 4 12:09:40 dovecot: auth-worker: Error: ==3071== Invalid read of size 8 Dec 4 12:09:40 dovecot: auth-worker: Error: ==3053== Invalid read of size 8 Dec 4 12:09:40 dovecot: auth-worker: Error: ==3057== Invalid read of size 8 Dec 4 12:09:40 dovecot: