similar to: problem using rJava with parallel::mclapply

All, I am trying to get the XLConnect package to work on one of my servers and I am getting an error that XLConnectJars cannot create the java virtual machine. The server is a 32-bit Windows Server 2003 machine with R 2.15.1. The version of Java installed on the server is J2SE Environment 5.0 update 8. I know this not the latest version of Java, and I will try to update it when I get

Dear All, I think there is something wrong with rJava on any Debian based distribution. I may be wrong, but I experiencing exactly the problems mentioned at https://github.com/amattioc/SDMX/issues/130 and at https://github.com/s-u/rJava/issues/110 A couple of packages (RJSDMX and xlsx) are now impossible to install on my debian stretch platform running R 3.4. It seems I am not the only one

Dear R users & developers, I coming across the following issue since R 2.15.2 32-bit (running on Windows XP 32.bit; some output left out for conciseness): > setInternet2(TRUE) > require(rJava) > .jinit() > getCRANmirrors() > system("ls" , intern = TRUE) Error in system("ls", intern = TRUE) : CreateThread failed My details are as follows: >

Not sure if this the right place, but I can't seem to subscribe to the rJava mailing list. Sorry for the noise. I have a jar file in the CLASSPATH variable. On running .jinit and checking .jclassPath, i can see the jar file containing the class. Yet when trying to instantaite the class, i get a class not found error. Now If if, create my own vm (see below), and then run .jinit (which will

Hello, I have experienced the following problem after installing rJava (it being a prerequisite for another package in which I am relly interested). Any helpful thoughts would be appreciated: OS: Windows XP Professional 2002 SP3, have Java 6 Update 20 from Sun, also installed the JDK from http://java.sun.com/javase/downloads/index.jsp (or at least I suspect I installed it as it asked to re-boot

Dear devel-listers, I found a conflct between rJava and data.table. Actually me questions is where to report it? Should I rather send it directly to the package maintainers or post it on some bug tracker. The problem is that data.table has a function called "J" and rJava uses the same quite intensively. I used the xlsx R package which depends on rJava to write .xls files and ran

Hi, Here is a problem we see with the Mac and Windows binaries of rJava (0.9-3) currently available on CRAN for R-devel (i.e. under bin/macosx/leopard/contrib/2.16/ and bin/windows/contrib/2.16/): > library(rJava) > .jinit("gaggle/inst/jars/gaggleRShell.jar") Error in .Call("R_do_new_object", ClassDef, PACKAGE = "base") :

Hello, Consider this: 1) library(parallel) res <- mclapply(1:2, stop) #Warning message: #In mclapply(1:2, stop) : # all scheduled cores encountered errors in user code is(res[[1]], 'try-error') #[1] FALSE 2) library(parallel) res <- mclapply(1:2, stop, mc.preschedule=FALSE) #Warning message: #In mclapply(1:2, stop, mc.preschedule = FALSE) : # 2 function calls resulted in an

Basically, I?m trying to install rJava on my windows XP machine. I think I have succeeded in doing so as it appears in the list when i type library() in R. However, when i type ?library(rJava)? I get an error dialog box saying: 'This application has failed to start because jvm.dll was not found. Re-installing the application may fix this problem' When I press 'OK' on the dialog

Dear All, I think there is something wrong with rJava on any Debian based distribution. I may be wrong, but I experiencing exactly the problems mentioned at https://github.com/amattioc/SDMX/issues/130 and at https://github.com/s-u/rJava/issues/110 A couple of packages (RJSDMX and xlsx) are now impossible to install on my debian stretch platform running R 3.4. It seems I am not the only one

I am desperate for help. I am trying to get the RJDBC and rJava .5to work on both my windows xp and linux Redhat EL5 Server. On both I get a ava.lang.ClassNotFoundException when calling JDBC(). My example is require(RJDBC) classPath='C:\\libraries\\mysql-connector-java-5.1.3-rc\\mysql-connector-java-5.1.3-rc-bin.jar' driverClass=c("com.mysql.jdbc.Driver") drv <-

Hi list, I'm wanting to use a matrix as input to some java code, but I seem to be unable to do this (See code below). When searching online for a solution I found that rJava 0.5-2 (the version under development not yet in CRAN) is adding "direct support for raw vectors as method parameters". Is this related? I also tried to use .jarray / .jcast in various combinations to no avail.

Hi Dirk, It was unclear to me to which extent it is a kernel/security patch vs (r)Java issue. In any case, this is really problematic for me as it prevents me de facto from running some key R packages for my daily work. I'll post again if I see some solution (other than downgrading the kernel) somewhere. Meanwhile, any suggestions for a fix is welcome. Cheers Lorenzo On Mon, Jun 26, 2017

Hello, I spent a lot of a time on a weird bug, and I just managed to narrow it down. In parallel code (here with parallel::mclappy, but I got it doMC/multicore too), if the library(tcltk) is loaded, R hangs when trying to open a DB connection. I got the same behaviour on two different computers, one dual-core, and one 2 xeon quad-core. Here's the code: library(parallel) library(RSQLite)

Folks, I was able to get R installed using: apt-get install r-base-core R version 2.14.1 (2011-12-22) Copyright (C) 2011 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: i686-pc-linux-gnu (32-bit) * What is the best way to upgrade to the latest version of R. * What is the best way to install rJava and XLConnect. Thanks for your time, Best, KW PS. I know some of you

Hi, I keep getting the below error regarding rJava which is required by package xlsx (I have used it in the past to directly import data from Excel 2010). I was on R version 2.15.0 when I was getting this error this morning. So I upgraded to 2.15.1 but still the same problem. I tried unstalling and reinstalling xlsx and even rJava directly from the source as indicated here:

I'm running r 2. on a mac running 10.6.4 and a dual-core macbook pro. I'm having a funny time with multicore. When I run it with 2 cores, mclapply, R borks with the following error. The process has forked and you cannot use this CoreFoundation functionality safely. You MUST exec(). Break on __THE_PROCESS_HAS_FORKED_AND_YOU_CANNOT_USE_THIS_COREFOUNDATION_FUNCTIONALITY___YOU_MUST_EXEC__()

Any ideas of what is happening when I attempt to load XLConnect? I think I installed everything correctly. I posted what I get when I installed rJava as well as when I attempted to load rJava directly. Thanks in advance for any help you can give on this. library(XLConnect) Loading required package: XLConnectJars Loading required package: rJava Error : .onLoad failed in loadNamespace() for

I'm running XLConnect 0.2-1 that depends on rJava 0.9-3. I am only able to work with 2 workbooks before I get this error... > SppRich = wb["SpeciesRichness"] # This command calls an Excel > spreadsheet Error: OutOfMemoryError (Java): GC overhead limit exceeded I have tried... > rm(list = ls()) ... to clear the workspace, but it doesn't help. I am using RStudio

Hello there. When I try to start the jvm using .jinit() after loading library(rJava) I don't seem to be able to as I get the message: Error in .jinit() : Cannot create Java Virtual Machine What is going on here? I have java 1.6 installed on my XP machine Thanks again. -- View this message in context: http://www.nabble.com/.jinit%28%29-problem-tf3774265.html#a10671963 Sent from the R