similar to: Possible problem with namespaceImportFrom() and methods for generic primitive functions

Hi, namespaceImportFrom in base/R/namespace.R has the following: fdef <- methods:::getGeneric(genName, impenv) The definition of getGeneric is in methods/R/RMethodUtils.R starts with: getGeneric <- ## return the definition of the function named f as a generic. ## ## If there is no definition, throws an error or returns ## NULL according to the value of

Dear list, It seems that a package (pkgB) using another package (pkgA) with S4 generics formed by taking existing functions (for example 'plot') must not import the existing functions ('plot') in its namespace to avoid the warning "replacing previous import: plot". Suppose we use the simple 'import' directive in the name space of pkgB. pkgA and pkgB files would

Hi, I've noticed an issue with S4 methods and namespaces which only arises in particular, difficult to reproduce configurations. One example is the ggbio package in Bioconductor, which currently emits these warnings when its namespace is loaded: ---------------------- library(ggbio) Loading required package: ggplot2 Attaching package: ‘ggbio’ The following object(s) are masked from

I have followed the instructions on how to build a Windows package and everything seems to work EXCEPT that I can't see the data files that I have loaded into the data directory. I have placed the appropriate data in the data directory (as in the instructions). There are 3 data sets, which I can see when I use the command in R. Details below. I have searched everywhere to try to fix this, but

Here's another issue (that might well be operator error): > install.packages("lattice") ... ... ** save image Loading required package: grid Error in importIntoEnv(impenv, impnames, ns, impvars) : object(s) 'dev.list', 'cm.colors', 'gray', 'heat.colors' are not exported by 'namespace:graphics' Execution halted ERROR: execution of

I decided to update my packages and then had a problem with loading the Matrix package http://cran.at.r-project.org/bin/windows/contrib/2.4/Matrix_0.9975-9.zip This is what happened when I tried to load it in: > library("Matrix") Error in importIntoEnv(impenv, impnames, ns, impvars) : object 'Logic' is not exported by 'namespace:methods' Error:

Hi all, I recently (today) updated the Matrix package and installed the latticeExtra package, but then when I tried to load the lme4 package, I got the following error message:- > library(lme4) Loading required package: Matrix Loading required package: latticeExtra Error in importIntoEnv(impenv, impnames, ns, impvars) : object(s) '.__C__lmeRep' are not exported by

I assigned a class the first problem in Pinheiro & Bates, which uses the data set PBIB from the SASmixed package. I have recently downloaded 2.0.1 and its associated packages. On trying library(SASmixed) data(PBIB) library(nlme) plot(PBIB) I get a warning message Warning message: replacing previous import: coef in: namespaceImportFrom(self, asNamespace(ns)) after library(nlme) and a

I've used packages for some years now and seldom had any trouble using the tgz files. Now I've come across something I've never seen before. > version _ platform i686-pc-linux-gnu arch i686 os linux-gnu system i686, linux-gnu status major 2 minor 1.0 year 2005 month 04 day 18 language R > library(lme4) Loading required package: methods

Dear R users, Im trying to load *"xlsx"* package which depends on *"xlsxjars"* and * "rJava"* packages. All the 3 packages (zipped files) are installed successfully in windows. I have added "C:\Program Files\Java\jre1.6.0_03\bin\client" to the PATH variable to get rJava working. However, the following error message results after inputting

Dear members, I can't install "nser" package. It is not in cran but install_version and install_github both are not working: > install_version("nser",version = "1.4.0") Downloading package from url: https://cran.rstudio.com//src/contrib/Archive/nser/nser_1.4.0.tar.gz These packages have more recent versions available. It is

It says that nser requires the most recent version of magrittr that you do not have installed. You must update magrittr before attempting to install nser: update.packages(oldPkgs = "magrittr") or at the prompt you were presented before, choose to update magrittr before installing nser. On Sun, Apr 9, 2023, 17:55 akshay kulkarni <akshay_e4 at hotmail.com> wrote: > Dear

Hi, I vaguely recall this was discussed in the past, but I cannot remember the context. The code below shows the problem: ---<---------------cut here---------------start-------------->--- R> library(stats4) R> library(lme4) Loading required package: Matrix Attaching package: 'Matrix' The following object(s) are masked from package:stats : xtabs

Hi, further down from the problem I asked about yesterday I encounter the following problem (please appologize for the lengthy mail - I have not found a brief example making the issue clear): - using R packages making use of namespaces & - S4 classes when using --with-package-versions in the install call: Pkgs install ok and the first pkg 'base' can be loaded in R

Hello there, I am having trouble installing R-2.6.1 on GNU/linux. Here is how I configure and run it: ./configure --with-x=no --enable-R-shlib make The configure step is uneventful, the tail end of make follows. Does anyone have any experience with that? Thanks a lot in advance for any suggestions. gcc -std=gnu99 -shared -L/usr/local/lib -o stats.so init.o kmeans.o ansari.o bandwidths.o

Hi List, I am trying to learn something about the exchange facilities between R and Windows Application with the RDCOMClient package from (http://www.omegahat.org/RDCOMClient/) and I have faced 2 problems: 1. I could not follow the link for the binary version of SWinTypeLibs package on the site, (as it has given me a restricted permission message), but I downloaded it by searching it on google

Folks, I am finding problems with using "dse": > library(dse1) Loading required package: tframe Error: c("package '%s' required by '%s' could not be found", "setRNG", "dse1") > library(dse2) Loading required package: setRNG Error: package 'setRNG' could not be loaded In addition: Warning message: there is no package called

Dear R users I am trying to load the package lmer4 but it seems the Matrix library is failing to load and giving me the following error message : >library(Matrix) Error in importIntoEnv(impenv, impnames, ns, impvars) : object 'Logic' is not exported by 'namespace:methods' Error: package/namespace load failed for 'Matrix' I have even reinstalled the Matrix

R gurus, I've exhausted my search of online help. This is my last resort. We're running R-2.1.1. I've been told by one of the R users here that we cannot upgrade to the lastest version because of some python rpy wrapper dependency that hasn't caught up to the latest version of R. The software is running on Solaris 10 x86. Gcc version is 3.4.1. R is installed in

Hello. I'm using the fAssets package from the Debian distribution. I've been experiencing the following behaviour: > yziquel at seldon:~$ R > > R version 2.9.2 (2009-08-24) > Copyright (C) 2009 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > > R est un logiciel libre livr? sans AUCUNE GARANTIE. > Vous pouvez le redistribuer sous certaines