similar to: Error in "Writing R Extensions"

Hi, as far as I understand it, the new R devel feature of processing non-Sweave vignettes will (a) locate any "[.][RrSs](nw|tex)$" or ".Rmd" files, (b) check for a registered vignette engine, (c) process the file using the registered "weave" function, (d) and possibly post process the generated weave artifact (e.g. a *.tex file). I'd like to propose to extend

Now that R 3.0.0+ supports non-Sweave vignettes, R-exts \S 1.4.2 seems to imply that it is possible to include both Sweave and knitr vignettes in a single package. I'm wondering if anyone has tried this and/or if there are some hidden gotchas putting this into practice, and concerned about creating problems with CRAN checks if I try this. Consider two vignettes: pkg/vignettes/vign1.Rnw,

I?m preparing a package (fastR) for submission to CRAN, but the vignette index keeps going AWOL, or at least R CMD check ?as-cran thinks so. I?ve tried several things and gave myself the weekend to think of other things, but I can?t figure it out. Perhaps someone on the list can lend a hand. Here?s one example situation, where I build the index.html file myself and put it in inst/doc/index.html

A package uses VignetteEngine: knitr; the package itself does not Suggests: knitr, but it Suggests: BiocStyle which in turn Suggests: knitr. Nonetheless, R CMD check fails indicating that a package required for checking is not declared. Is it really the intention that the original package duplicate Suggests: knitr? This is only with a recent R. In detail, with $ Rdev --version|head -3 R Under

Dear all, I'm trying to use a Markdown vignette with UTF-8 encoding. It compiles well when knitting the vignette in RStudio, but it fails to recognize the UTF-8 settings when building the source package. Can someone point out what I'm doing wrong? I tried to put the relevant information below. Best regards, Thierry Details: Using 64-bit R 3.1.2 with encoding = "native.enc"

I haven't figured it out entirely, but it looks like there are a couple of small glitches with knitr-based vignettes and SweaveParseOptions. I posted the tarball of a package with a knitr vignette with (as far as I can tell) everything properly coded in the DESCRIPTION file (VignetteBuilder: knitr, Suggests: knitr) and the vignette itself (%\VignetteEngine{knitr::knitr}). When Windows

Trying to Stangle / Sweave a file $ cat vignette.Rnw %\VignetteEngine{knitr} \documentclass{article} \begin{document} \end{document} results in a misleading error message: ~/tmp$ R CMD Stangle vignette.Rnw Error: Vignette engine package not specified Execution halted when what is missing is the full specification knitr::knitr; 'vignette engine package and function not specified' ?

Dear Duncan, The UTF-8 characters aren't properly rendered in the pdf version of the vignette. $?? ????? ?????? ?????? ????? ?? ?? is rendered as $????? ?????????? ???????????? ????? ?????? ? ???????? ???????? The same problem occurs when I use render("vignette.md", output_format = "mypackage::mystyle"), instead of render("vignette.md", output_format =

A few things to clarify: 1. You do not necessarily have to keep the \usepackage{} line if you use %\VignetteEncoding{UTF-8}, because Pandoc will use UTF-8 anyway in its LaTeX template. 2. Perhaps the vignette engine in R has done something clever to convert utf8 to UTF-8, but I'd recommend %\VignetteEncoding{UTF-8} instead of %\VignetteEncoding{utf8} to make sure it is a valid encoding name,

I am doing [R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet?; Platform: x86_64-apple-darwin10.8.0 (64-bit)] > R CMD build DAAGviz > R CMD check DAAGviz_1.0.3.tar.gz Without a .Rinstignore file, I get: <<< The following files should probably not be installed: ?figs10.pdf?, ?figs11.pdf?, ?figs12.pdf?, ?figs13.pdf?, ?figs14.pdf?, ?figs5.pdf?, ?figs6.pdf?, ?figs9.pdf?

Hello all, I wrote a bash script in Mac OS that takes my .rnw file, knit it and then makes a .pdf. To knit my file, I'm using the command Rscript -e "library(knitr); knit('file.rnw', encoding='utf8')" and everything works fine. However, I don't want the ## characters in my final document. I tested, using R prompt, the following commands library(knitr)

Si, ya habia hecho un archivo markdown y lo habia corrido hace unos cuantos meses El sistema es windows 7 y R version 3.0.1 (2013-05-16) el mensaje es el siguiente: > require(knitr); knit('Quiz1Markdown.Rmd', encoding='ISO8859-1'); Loading required package: knitr Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : there is no package called

On 19/02/2018 5:47 AM, Michael Hannon wrote: > Thanks, Duncan. The files in question are Emacs Org-mode files, and I > think these are more or less isomorphic to Rmd files, but I haven't > used Org-mode in a long time, so I think the mapping (Org-mode ==> > Rmd) would be painful. If they aren't LaTeX then they won't be able to masquerade as Sweave files, so things are

Hello List, while dealing with a questin of 'xiaodao' ( http://r.789695.n4.nabble.com/Problem-with-large-small-numbers-in-knitr-tp4653986.html) I noticed that copying the default inline hook function obtained by knit_hooks$get("inline") into a knit_hook$set(inline = <...>) call turns off exponential fomatting in the resulting .tex file. I used a stripped version of

Gracias, si uso R estudio, cree un documento nuevo, deje el ejemplo que el Restudio trae y me volvio a aparecer el mismo error, que puedo hacer para solucionarlo? El 1 de julio de 2013 15:21, Marcuzzi, Javier Rubén < javier.ruben.marcuzzi@gmail.com> escribió: > Estimada Gaby Nieves > > Si usted usa Rsutudio puede crear un archivo nuevo, le sugiero crear este, > sin colocar

On 09/12/2014, 4:48 AM, ONKELINX, Thierry wrote: > Dear all, > > I'm trying to use a Markdown vignette with UTF-8 encoding. It compiles well when knitting the vignette in RStudio, but it fails to recognize the UTF-8 settings when building the source package. Can someone point out what I'm doing wrong? I tried to put the relevant information below. You don't describe the

> On 19 Feb 2018, at 12:25, Duncan Murdoch <murdoch.duncan at gmail.com <mailto:murdoch.duncan at gmail.com>> wrote: > > On 19/02/2018 5:47 AM, Michael Hannon wrote: >> Thanks, Duncan. The files in question are Emacs Org-mode files, and I >> think these are more or less isomorphic to Rmd files, but I haven't >> used Org-mode in a long time, so I think

Hola: Efectivamente, hicimos este taller el 24 de julio de 2012 y quedo grabado. Aquí está la información. El vídeo. En las 5ª jornadas de R hicimos una versión de taller actualizada y los materiales está aquí <http://fobos.inf.um.es/R/taller5j/indice.html> aunque también puedes ir aquí <http://fobos.inf.um.es/R/taller5j/> y descargar todos los materiales, pues se trata de

Muchas gracias Carlos. Tengo las mismas versiones pero no logro separar los chunks cuando uso #+, pero si lo logro cuando uso #". Mi script es spin("prueba.R", knit = FALSE) y si me hace un Rmd. #+ a = c(1,2,3) #+ mean(a) Ejecuto, > spin("prueba.R", knit = FALSE) y obtengo un prueba.Rmd ```{r } a = c(1,2,3) ```{r } mean(a) ``` Pero si escribo: #' a =

Hi, Recently I saw a couple of cases in which the package vignettes were somewhat complicated so that Stangle() (or knitr::purl() or other tangling functions) can fail to produce the exact R code that is executed by the weaving function Sweave() (or knitr::knit(), ...). For example, this is a valid document that can pass the weaving process but cannot generate a valid R script to be source()d: