similar to: R-devel Digest, Vol 125, Issue 2

I've been updating a package and, when installing a local devel version, I get an error "object 'confusionMatrix' not found whilst loading namespace". Looking around online, it appears that this might be related to loading a specific RData file, but it doesn't seem to be the case AFAICT. I've installed the devel version in the last week without issues and the

On an (Intel Leopard) Mac I try to build a package (mxFinance) which depends on another package (mxGraphics). The dependendy is 1) a 'Depends:' in DESCRIPTION and 2) an import in NAMESPACE. - The build fails if the dependent package (mxGraphics) is not installed in the R.framework Do I need to have installed all packages which are required by packages to be built binary (source builds

Dear list, (this is a follow up from a previous query) Why does R CMD INSTALL write most of its messages to stderr? If it wrote to stdout, then we could capture its output within an R session when calling sink("stdout.txt", type="output") install.packages("MASS", type="source") sink() As it stands, the stderr messages can't be captured via

(1) ...need to speed up a monte-carlo sampling...any suggestions about how I can get R to use all 8 cores of a mac pro would be most useful and very appreciated... (2) spent the last few hours trying to get pnmath to compile under os- x 10.5.4... using gcc version 4.2.1 (Apple Inc. build 5553) as downloaded from CRAN, xcode 3.0... ...xcode 3.1 installed over top of above after

Hi. I am writing some code in C that I would like to link into R. My Makevars file is: PKG_CPPFLAGS=-I/usr/local/include PKG_LIBS=-L/usr/local/lib -lgsl PKG_CFLAGS = -Wall -O0 -g -p -pg The source file is core.c,. and I am compiling using R CMD SHLIB core.c The output is gcc -arch x86_64 -O3 -g -p -std=gnu99 -I/Library/Frameworks/ R.framework/Resources/include

A couple of my colleagues are having problems building R-3.2.4 on Mac OS X El Capitan somehow related to libiconv. I personally don't have any problems on either of my Macs. I'm hoping thie make log might trigger something in the readers of this list: gcc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L../../../../lib

Dear R gurus, I attempt to install the latest version of R from source on my MacBook Pro, using latest versions of Xcode and gfortran for Lion and configure options: ./configure --with-libintl-prefix=/sw --enable-R-shlib (this last option necessary to further install the Rpy Python package) I got the following unreduced compilation error: gcc -std=gnu99 -dynamiclib

Dear all, I'm trying to compile FORTRAN code to be used in R, failing miserably. I got a simple code function to try to figure out what is going wrong. Here is the code (available on the web) : subroutine bar(n, x) integer n double precision x(n) integer i do 100 i = 1, n x(i) = x(i) ** 2 100 continue end 1. I compiled the

I've been trying to get R+PostgreSQL+PL/R to work together on a OSX machine without the Framework and CoreFoundation options and have noticed some suspicious switches when compiling packages. I've installed R (on OSX) with the following ./configure: ./configure \ CC="gcc -arch i386" \ CXX="g++ -arch i386" \ OBJC="gcc -arch i386" \

I am developing a package for analysis of seismic data that relies on a Fortran library. Package compilation works fine on Ubuntu and Red Hat Enterprise but fails for R 2.15.3 on Mac OSX 10.8.4. I've included the entire dump below but the relevant error message seems to be: ld: warning: ignoring file libmseed/libmseed.a, file was built for archive > which is not the architecture being

Hi, Wasn't able to see a bug report on this issue yet... Hope I'm not doublng up. There seems to be little info around for what "R CMD javareconf" does but it has some deprecation errors seemingly. On running cmd in terminal: Java interpreter : /usr/bin/java Java version : 9 Java home path : /Library/Java/JavaVirtualMachines/jdk-9.jdk/Contents/Home Java compiler :

Hello. I wrote a package (that contains C source) that I've been compiling and running on both Linux and Windows for about a year. However, that same source package fails to compile on MacOS (10.4.11, PowerPC G4, Xcode installed, gcc version 4.0.1, make version 3.80, ld version cctools-590.23.2.obj~17). There is nothing platform-specific in the code-- just numerical functions that I

Hello, I am trying to compile some F77 subroutines as shared objects for R on my Mac. --> Mac OS-X Version 10.4.11 (Tiger Intel Mac) I have done this (successfully) before on Sun Solaris and Linux Fedora systems using the following command. > R CMD SHLIB myfile.f I have g77 installed from this page. http://hpc.sourceforge.net/ I am using R 2.8.1, and I have installed all 4 additional

Hi, I'm trying to install rimage on a Mac OS X 10.4 machine. I followed the advice in previous R-help threads and got over the hurdles of having the header files in the right places, among other things. But I can't figure out what to do with this error. ice.pnl.gov:/home/waichler<949>system_profiler -detailLevel mini SPSoftwareDataType Software: System Software Overview:

Hi! I?m on macOS 10.13.3 and just installed the new Java 10 using Homebrew Cask. I also have installed R with Homebrew. Everything seems to work fine, however I just get different outputs if I run sudo R CMD javareconf or R CMD javareconf. With sudo I get pointed to Java 9 and without sudo I get pointed to Java 10. I really don?t know why. Without sudo: $ R CMD javareconf

I am not a Mac user, but I do use Linux and I would recommend not running R with sudo unless you are an admin ninja. That defensive practice would render the answer to your question moot. It is possible that your problem may have started with inappropriate use of sudo in configuring java, but configuring Java is not on-topic here. -- Sent from my phone. Please excuse my brevity. On March 27,

Hello, I'm working with R, I try to call C from R. When I try to compile my file.c to make file.so, with the command : R CMD SHLIB foo.c return the message : gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -Wl,-macosx_version_min -Wl,10.4 -undefined dynamic_lookup -single_module -multiply_defined

Hello, I've noticed that with g++ 4.3 I get the following "warning: deprecated conversion from string constant to ?char*?" when I call e.g., Rprintf("Hello world"); or when I try to define a const char e.g., char lower = 'L'; I am wrapping the c++ code in extern "C" {}. This seems to be something new with g++ 4.3, because the same code compiled

I recently bought a new Intel Mac with OSX Leopard. I reinstalled the latest version of R and the Xcode tools. I'm trying to compile a C source code with the R compiler in X11, and I receive the following error message: [Macintosh:School Work 07-08/36-711/HW 3] dajmcdon% R CMD SHLIB McDonaldHW3.c gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp

I recently bought a new Intel Mac with OSX Leopard. I reinstalled the latest version of R and the Xcode tools. I'm trying to compile a C source code with the R compiler in X11, and I receive the following error message: [Macintosh:School Work 07-08/36-711/HW 3] dajmcdon% R CMD SHLIB McDonaldHW3.c gcc-4.0 -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -std=gnu99 -no-cpp-precomp