similar to: compiling R from source with a catch!

Displaying 20 results from an estimated 2000 matches similar to: "compiling R from source with a catch!"

2013 Dec 02
0
[LLVMdev] Configuring for cross-compilation doesn't work
Let me add that when not specifying the '--host' option, the whole thing fails as well: ../llvm/configure CXX=icpc CC=icc CXXFLAGS="-O3 -mmic" CFLAGS="-O3 -mmic" checking for C compiler default output file name... a.out checking whether the C compiler works... configure: error: cannot run C compiled programs. If you meant to cross compile, use `--host'. Frank
2013 Dec 02
3
[LLVMdev] Configuring for cross-compilation doesn't work
Hi, I am trying to build LLVM 3.4 RC1 with the Intel compiler targeting the Xeon Phi (native). In order to skip the building and execution of a test binary during configuration one needs the set the "-host" option indicating a cross compilation. Intel suggests to use "x86_64-unknown-linux-gnu". However, either using "x86_64-unknown-linux-gnu" or something
2015 Apr 21
2
shlib problems with Intel compiler
Hi, I'm encountering trouble compiling caTools_1.17.1.tar.gz and e1071_1.6-4.tar.gz on a Linux system using the Intel compiler suite. 14 other packages I generally use installed without any trouble. I notice both of these trouble packages have a C++ component, so I wonder if that might be the issue. Below, there's information on my platform, compiler, and some diagnostic output showing
2015 Apr 22
1
shlib problems with Intel compiler
Hi Martyn, Thanks for your insight, that seems pretty direct. Unfortunately, I did not compile this version of R (it's on a large supercomputer system and this version of R was installed by the admins). Using "R CMD config", I see the following relevant settings: DYLIB_LD = icc -std=gnu99 DYLIB_LDFLAGS = -shared -openmp LDFLAGS = -L/opt/compilers/intel/cce/9.1.039/lib
2008 May 29
2
problem building R packages on RHEL 4 Linux with Intel compilers
I would like to build R and packages with the Intel 10.1 compilers in RHEL4. Using the flags below, I can successfully build R using a vanilla ./configure, but when I install new packages they build with gcc. My sysadmin suggested adding the flags to ./configure as illustrated below, but then the R build blows up with the config tail output that follows far below. It looks like gcc is still being
2012 Dec 28
1
linux multi-threaded compilation is running only on one processor
Hello, I compiled R-2.15.2 with linux intel compilers (see below). when I execute some R code on a // 4 proc x 4 cores // server (export MKL_NUM_THREADS = 16) very often I have the situations where only one processor (4 cores) is active instead of 4 (16 cores) ! do you know this fact depends on what ? thank you ! P.S. many functions of R are single-threaded, is there a simple way to make them
2023 Jul 18
2
Installation of R-4.3.1 with intel 2022
Note that 'intel 2022' is a bit vague. The current version is 2023.1.0, and that has both the 'classic' (icc/icpc/ifort which it seems you used) and new (icx/ixpx/ifx) compilers -- the former are said to be going to be discontinued later this year. R did not know about ifx so did not build with the new set. The parts of the manual Tomas referred to were about the old
2015 Sep 29
2
Build R with MKL and ICC
On Wed, Sep 9, 2015 at 11:26 PM, Nathan Kurz <nate at verse.com> wrote: > > As a short and simple approach, I just compiled the current R release > on Ubuntu with ICC and MKL using just this: > > $ tar -xzf R-3.2.2.tar.gz > $ cd R-3.2.2 > $ CC=icc CXX=icpc AR=xiar LD=xild CFLAGS="-g -O3 -xHost" CXXFLAGS="-g > -O3 -xHost" ./configure
2023 Jun 20
1
Installation of R-4.3.1 with intel 2022
Hi all, I have the issue: icc -std=c99 -std=gnu11 -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O3 -wd188 -ip -mp -c eval.c -o eval.o arithmetic.c(66): warning #274: declaration is not visible outside of function int matherr(struct exception *exc) ^
2015 Sep 30
1
Build R with MKL and ICC
On Tue, Sep 29, 2015 at 8:11 PM, Nathan Kurz <nate at verse.com> wrote: > Hi Arnaud -- > > I'm glad it's working for you. I'm not sure I understand your final > answer. Are you saying that the version I posted worked for you as > given, or that you had to remove some of the other options? I say it works perfectly when using the single dynamic library (lmkl_rt):
2015 Sep 07
2
Build R with MKL and ICC
On Sat, 2015-09-05 at 11:53 +0200, arnaud gaboury wrote: > On Fri, Sep 4, 2015 at 5:58 PM, Martyn Plummer <plummerm at iarc.fr> wrote: > > On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote: > >> On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote: > >> > After a few days of reading and headache, I finally gave a try at
2017 Apr 21
1
Intel MKL compiling issue
> I would appreciate any insights over compiling R 3.4 with Intel MKL -- I have been successful until R 3.3.3 but now it stops complaining about pcre though it worked without Intel MKL as follows, I successfully built R-rc_2017-04-19_r72555.tar.gz with icc & MKL on centos 7 with this: # https://software.intel.com/en-us/articles/build-r-301-with-intel-c-compiler-and-intel-mkl-on-linux#
2015 Sep 02
4
Build R with MKL and ICC
After a few days of reading and headache, I finally gave a try at building R from source with Intel MKL and ICC. Documentation and posts on this topic are rather incomplete, sometime fantasist et do not give much explanations about configure options. As I am not sure if mine is correct, I would appreciate some advices and hints. OS: Fedora 22 parallel_studio_xe_2016 Hardware : 8 Thread(s) per
2013 Jul 11
2
[LLVMdev] LLVM x86 backend for Intel MIC : trying it out and questions
Dear all, I'm interested to analyse what could be done with current LLVM trunk to deliver basic Intel MIC support. Let's say, for basic level we'd want just scalar code execution, no threading, no zmm vectors. Attached verbose in text, but functionally very simple patch copy-pastes x86 and x86_64 backends into 32-bit and 64-bit K1OM. In the end of the message you can find how simple
2015 Apr 22
0
shlib problems with Intel compiler
On Tue, 2015-04-21 at 11:46 -0600, Andy Jacobson (NOAA Affiliate) wrote: > Hi, > > I'm encountering trouble compiling caTools_1.17.1.tar.gz and > e1071_1.6-4.tar.gz on a Linux system using the Intel compiler suite. > 14 other packages I generally use installed without any trouble. I > notice both of these trouble packages have a C++ component, so I > wonder if that might
2020 Jul 10
3
Compilation error for R 4.0.2
Hello, I experienced a compiler error when I tried to compile the latest version of R i.e. R4.0.2 making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c grep.c(74): catastrophic error: cannot open source file "pcre2.h" # include<pcre2.h> (The pcre2.h header file is actually present!) I used the
2008 Feb 13
1
compiling 2.6.2 using icc
I am having trouble compiling R-2.6.2 on suse linux x86_64 using the intel compiler. I read section C.2.1 Intel compilers in the R Installation and Administration manual, and put CC=icc CFLAGS="-g -O3 -wd188 -ip" F77=ifort FFLAGS="-g -O3" ICC_LIBS=/opt/intel/cce/10.1.012/lib IFC_LIBS=/opt/intel/fce/10.1.012/lib/ LDFLAGS="-L$ICC_LIBS -L$IFC_LIBS -L/usr/lib64"
2012 Jan 11
1
R error in make check
Hi, After building R 2.14.1 on a Linux system (SUSE Linux Enterprise Server 11 (x86_64) ), I ran "make check" but it halted with the foll error: Testing examples for package ?base? Error: testing 'base' failed Execution halted I looked in <build dir>/test/Examples/base-Ex.Rout.fail and found the foll: *******EXCERPT ***** ... > ### ------- Pickyness Flags :
2015 Sep 04
2
Build R with MKL and ICC
On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote: > On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote: > > After a few days of reading and headache, I finally gave a try at > > building R from source with Intel MKL and ICC. Documentation and posts > > on this topic are rather incomplete, sometime fantasist et do not give > >
2013 Jul 12
0
[LLVMdev] LLVM x86 backend for Intel MIC : trying it out and questions
Hello Dmitry, I'm working on KNL backend and plan to push it to the open source once the ISA becomes public. We do not plan to support KNC architecture in open source. - Elena -----Original Message----- From: llvmdev-bounces at cs.uiuc.edu [mailto:llvmdev-bounces at cs.uiuc.edu] On Behalf Of Dmitry Mikushin Sent: Friday, July 12, 2013 01:51 To: LLVM Developers Mailing List Subject: