similar to: Using a shared object without installing a library required by the object.

I am the guy who compiles the OpenMx binaries. We would be delighted to place our package on CRAN, once the project is stable enough so that we are comfortable releasing it to the larger public. Let's try to track down where I made a mistake. Our Makevars.in file contains the line: PKG_LIBS=$(FLIBS) $(BLAS_LIBS) $(LAPACK_LIBS) In addition, on the build machine I noticed that a copy of

Hey everyone! Recently there has been some progress on LLVM-based tools for manipulating MachO binaries: llvm-objcopy has been gaining a lot of important bits to support MachO (it's relatively close to the point where one can implement the strip-like functionality), llvm-lipo is functional and supports most of cctools' lipo options (https://llvm.org/docs/CommandGuide/llvm-lipo.html). There

Hey Michael, I completely agree that setting the rpath properly the first time around is much preferred. But, changes to the binary, particularly during development is much quicker. Prebuilt libraries which are being repackaged is one use case that is missed. In the past, I’ve even used it to repair am incorrectly built library which was missing the library name. There are a few different

Howdy, I was under the impression that CRAN took care of automagically making sure the CRAN compiled fortran was linked to the fortran libs distributed in R binaries. Today was the first day I was on a mac without Xcode and found my fortran based package has issues, which appears only on the mac. Do we need to have a special compile library path set in the Makefile to direct CRAN to the R

Hello, I am trying to compile some F77 subroutines as shared objects for R on my Mac. --> Mac OS-X Version 10.4.11 (Tiger Intel Mac) I have done this (successfully) before on Sun Solaris and Linux Fedora systems using the following command. > R CMD SHLIB myfile.f I have g77 installed from this page. http://hpc.sourceforge.net/ I am using R 2.8.1, and I have installed all 4 additional

Full_Name: Timothy Brick Version: 2.10 OS: Mac OS X (seen on both 10.6 and 10.5) Submission from: (NULL) (63.255.24.5) When using install.packages in R on Mac OS X, packages that require gfortran throws an error (Example below from installation of OpenMx package): Loading required package: OpenMx Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library

Dear Simon, > On Jun 11, 2020, at 9:00 PM, Simon Urbanek <simon.urbanek at r-project.org> wrote: > > Wayne, > > that one is unrelated, but interesting - you can fix it with > > sudo install_name_tool -change \ > /usr/local/lib:/opt/X11/lib/libtk8.6.dylib \ > /usr/local/lib/libtk8.6.dylib \ > /usr/local/bin/wish8.6 > > There is a bug in tcltk with

I don't know what has changed with Catalina But I just tried my tk console from the shell command tkcon And got the following error. Here is my shell: $ tkcon dyld: Library not loaded: /usr/local/lib:/opt/X11/lib/libtk8.6.dylib Referenced from: /usr/local/bin/wish Reason: image not found Abort trap: 6 I don't know whether this is a red herring or not, but the

I am having a strange problem. I have been using python + rpy2 on my Mac for quite sometime now. I recently upgraded to OS X 10.8 from 10.6 and that's when the problem began. Now, when I try to load some R packages (like zoo) using robjects.r, python crashes with seg fault 11. Here's an example below: >> import rpy2.robjects as ro >> ro.r(''' library(zoo)

I am having a strange problem. I have been using python + rpy2 on my Mac for quite sometime now. I recently upgraded to OS X 10.8 from 10.6 and that's when the problem began. Now, when I try to load some R packages (like zoo) using robjects.r, python crashes with seg fault 11. Here's an example below: >> import rpy2.robjects as ro >> ro.r(''' library(zoo)

Dear R-users: Hi, I read here ( http://stackoverflow.com/questions/2287616/controlling-digits-in-r) that R is only accurate up to the 15th decimal place, despite the fact that if you choose to display more decimal places, it will. I wonder if R uses the information beyond the 15th decimal place in actual computation. Thanks! Best, Xiao [[alternative HTML version deleted]]

Dear R-Developers, I just started learning how to use Rcpp. Earlier while using it, I encountered an error as shown below: file74d8254b96d4.cpp: In function ‘Rcpp::NumericVector foo(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::Function, Rcpp::Function)’: file74d8254b96d4.cpp:10: error: invalid operands of types ‘SEXPREC*’ and ‘R_len_t’ to binary ‘operator/’ make: ***

Hi all, With the new staged installation, it seems that R CMD INSTALL sometimes fails on macOS due to these lines [1] when sapply() returns a list. The x13binary package has an example [2], reproducible with the following steps: $ git clone git at github.com:x13org/x13binary.git && cd x13binary $ git checkout 663ad7122 $ R CMD INSTALL . (We've also run into it in an internal

I'm not sure if this is the right target to which to direct this post, but I couldn't think of anything more appropriate. I just downloaded the Hmisc package to the Imac that I use. When I attempted to load it I got an error to the effect that it could not load the library: /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/ libgfortran.2.dylib Note the ``2.5'' in

Hello, It seems the recent Mac OS X 10.4.11 update installed a new libBLAS.dylib in the Accelerate framework which either contains a bug itself or exposes a bug somewhere in R's lapack code on the PowerPC G4 and G5. My build of R 2.6.0 executed the tests/lapack.R code succesfully when I upgraded when 2.6.0 was released. After the OS update, it now crashes. This happens both with the version I

On 5/24/19 2:52 PM, Martin Maechler wrote: >>>>>> Kara Woo >>>>>> on Thu, 23 May 2019 14:24:26 -0700 writes: > > Hi all, > > With the new staged installation, it seems that R CMD INSTALL sometimes > > fails on macOS due to these lines [1] when sapply() returns a list. The > > x13binary package has an example [2],

Full_Name: Matt Fantle Version: 1.16 OS: Mac OS 10.4.7 Submission from: (NULL) (128.118.174.213) Problem: R crashes when 'Command-f' is pressed to begin "Find" Frequency: This problem is intermittant. Once R crashes, the only solution is to restart R and try to Find again. There is no regularity to the problem. If R is opened by double-clicking on a ".R" file,

Hi all, I tried to load a package which includes a shared object on one of my Macs, and I got an error message below, which suggests that the file " libquadmath.0.dylib" is missing in the /usr/local/lib folder. On my other Mac however, I have no problem loading the package, and the file " libquadmath.0.dylib" is in the /usr/local/lib folder. I wonder where this

MySQL version: 5.5.10 Ruby version: 1.8.7 Rails version: 3.0.5 I''m trying to get a Mac OS X 10.6.6. development box up and going, and I''m having problems with ''rake db:migrate.'' This is how I installed the mysql gem $ sudo env ARCHFLAGS="-arch x86_64" gem install --no-rdoc --no-ri mysql --version 2.7 -- --with-mysql-dir=/usr/local/mysql

Hello, I just installed R-2.6.0 on my computer (OSX 10.4.10, ppc) and get the following message when I try to load the library stats: > library(stats) Error in dyn.load(file, ...) : kann shared library '/Library/Frameworks/R.framework/Resources/ library/stats/libs/ppc/stats.so' nicht laden: dlopen(/Library/Frameworks/R.framework/Resources/library/stats/libs/ ppc/stats.so,