Displaying 20 results from an estimated 10000 matches similar to: "R CMD config for R >= 3.0.1"
2002 Oct 16
1
Documentation for .Renviron (PR#2175)
Hi everyone,
Two minor points about ?.Renviron.
1) If R_ENVIRON is not set then R defaults to `${R_HOME}/etc/Renviron',
not `${R_HOME}/etc/Renviron.site' as stated.
2) In the details, there is a missing "way" in "`value' is processed
in a similar to a Unix shell."
Cheers, Jonathan.
--please do not edit the information below--
Version:
platform =
2009 Jul 21
1
Customization options with .Renviron, R_LIBS, .Rprofile etc
Hi,
I am interested in customizing the installation of R. I have
gone through the ?R Installation and Administration? manual. But some
of the stuff is not clear to me and I would like to get clarifications
on the following points (for a Windows installation with
R_HOME=C:\\R\\R-2.9.1 ) :
1. I understand that I need to create a
file, .Renviron with the following path : R_HOME\\etc\\.Renviron where
2017 Feb 09
2
R CMD check error
Martin,
I am aware of --vanilla; I use it myself for some testing. In this case R_LIBS_USER was
set externally (part of my login) and does not involve any of the R scripts. That means
it is inherited by any subprocess. For example:
tmt1495% R --vanilla --no-environ
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
2010 Jun 09
2
Question on trying to build R 2.11.1 on Tru64(aka OSF1)
First I tried 'setenv R_SHELL /usr/local/bin/bash', as bash is the weapon
of choice for the faculty wishing to use R, then ran ./configure as before.
The ./configure output line
using as R_SHELL for scripts ... /usr/local/bin/bash
would seem to indicate that the R_SHELL environment variable was recognized
and acknowledged. However, I got the same build error:
gnumake[2]: Entering
2007 Mar 26
2
setting LD_LIBRARY_PATH
Dear R-help,
I am trying to use a package (not from CRAN) which includes two shared
library (.so) files. The maintainer suggests inserting two lines
in /usr/bin/R,
LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:path-to-package/lib
export LD_LIBRARY_PATH
This works, but I felt more comfortable putting the first line
in .Renviron or $R_HOME/etc/Renviron.site. However this doesn't seem to
work, and I
2000 Mar 07
1
Problems with nlme (PR#471)
Dear R developers,
first of all let me join the chorus of congratulations for the release
of R 1.0.0. Well, done!
Unfortunately, I find it necessary to e-mail in a bug report regarding
the `nlme' package. On my office machine I experience the following
trouble:
bossiaea:/opt/R$ R CMD check -c nlme
Checking package `nlme' ...
Massaging examples into `nlme-Ex.R' ...
Running
2015 Jul 29
1
Installing/updating packages on a lab network
On 7/28/2015 1:32 PM, Uwe Ligges wrote:
> Just add the line
>
> R_LIBS_SITE=F:/R/library
>
> to the file R_HOME/etc/x64/Renviron.site
Thanks, Uwe
I have no way to test this and our IT people who do the installation
know nothing of R, so follow-up questions:
* There is no R_HOME/etc/x64/Renviron.site file, but there is a
R_HOME/etc/Rprofile.site I can modify and
ask them to
2002 Oct 17
1
Startup on Windows 2000
I am having difficulty coming to grips with Appendix B.2 of the
otherwise very useful "An Introduction to R" and the related help file
for Startup. I am running RGui 1.6.0 on a Windows 2000 machine from the
default installation. How the concepts discussed in B.2 and the Startup
help file relate to what I see on my machine is something of a mystery.
I quote from the Startup file:
2015 Jul 28
2
Installing/updating packages on a lab network
I'm the faculty member in my department who advises our IT staff on the
details of installing R for
students and faculty on our Windows 7 lab network. We are about to
upgrade from R 3.1.1 to
R 3.2.1, and once that is done, this version of R and all installed
packages will be frozen in the
image that appears in C:/Program Files/R/R-3.2.1/ on every lab computer,
and this image is
refreshed
2017 Sep 16
1
R_LIBS_USER not in libPaths
I have not intentionally set R_LIBS_USER. I looked for an Renviron.site
file but did not see it in R/etc or my home directory. The strange part is
that if I print Sud.getenv I see a value for R_LIBS_USER. However, this
directory is not showing under libPaths.
I though .libPaths should contain R_LIBS_USER.
I also noticed that R related variables are not in the system or user
variables because I
2010 Jul 24
1
R CMD check - "there is no package called"
I'm trying to update my "perturb" package to get rid of some small warning
messages. The examples in "perturb" use the "Duncan" dataset from the "car"
package and I have "car" installed in R. But when I run "R CMD check", I get an
error message
> require("car")
Loading required package: car
Warning in
2007 Oct 29
2
a package depending on other packages does not pass checking on windows
Dear developers,
I am writing a package that depends on some other packages. The
dependencies are stated in the `description' file under "Depends". They
are installed in my private library, which is pointed to by setting
R_LIBS in .Renviron, and are available if R is started normally.
However, when I try to `R CMD check' my package, R complains about the
dependencies being not
2011 Jan 20
1
GPU packages and 'Debian R Policy'
Hi there,
Moving this request for info over from an R-HPC-SIG list thread as
the issue is less HPC than something that has bitten me as a result
of trying to install HPC (read CUDA) R packages.
Background to this is that I have both a Ubuntu host for a Tesla card
that some researchers are looking to do CUDA-related R computation on,
and a prototype, RHEL-based, cluster that is being used to
2015 Mar 10
1
R_HOME default setting
Dear All,
I would like to reset default R_HOME PATH for R.3.1.3.
I installed R-devel in /usr/local/R-devel but I can't install many packages
as tcltk.
I uninstalled R-devel and I would reuse R.3.1.3 but the PATH is remaining
to /usr/local/R-devel.
I touch ~.Renviron file with
R_HOME=/usr/lib/R/bin/
RSTUDIO_R_HOME=/usr/lib/R/bin/
R_LIBS=~/R/x86_64-pc-linux-gnu-library/3.1
2011 Mar 04
1
Environment variable PATH in Windows
Colleagues,
I am trying to understand how R (2.12.1) obtains the PATH environment variable in Windows (7 or Vista). Startup {base} directs one to:
"R_ENVIRON" -- which equals "" in my systems
R_HOME/etc/Renviron.site -- which does not exist
Next, it directs to:
R_HOME/etc/Rprofile.site -- which also does not exist (the expected behavior in a "factory-fresh"
2005 Aug 16
2
bug? (PR#8074)
Full_Name: Paul Mosquin
Version: 2.1.1
OS: Windows XP
Submission from: (NULL) (24.225.66.48)
I just don't understand this:
>(2*2)==4
[1] TRUE
> .2*.2
[1] 0.04
> (.2*.2)==.04
[1] FALSE
or
> x=.04
> x
[1] 0.04
> y=.2*.2
> y
[1] 0.04
> y==x
[1] FALSE
2006 Jul 19
1
Test for equality of coefficients in multivariate multipleregression
Dear Berwin,
Simply stacking the problems and treating the resulting observations as
independent will give you the correct coefficients, but incorrect
coefficient variances and artificially zero covariances.
The approach that I suggested originally -- testing a linear hypothesis
using the coefficient estimates and covariances from the multivariate linear
model -- seems simple enough. For
2003 Oct 31
2
Creating packages in 1.8
Hi,
I decided to upgrade to 1.8 today... :-)
Anyway, we are writing our own package that is dependent on a
bioconductor library - 'affy'.
I've checked and when I fire up R, library(affy) behaves as expected...
so it all seems to be installed and OK...
In the DESCRIPTION file in my package source I have the line:
Depends: affy
When I run R CMD check simpleaffy
I get to:
...
*
2002 Jul 12
1
.Rprofile on MacOSX
I'm new to R, so apologies if the answer to my question is very obvious to
everyone else!
I use the carbon version of R (1.5.1), not the Darwin version. After a bit
of a battle, I'm getting to grips with using R, and really getting to like
it, but I'm still having trouble customising startup the way I'd like it.
Reading ?Startup, I see that I can specify some commands to be run
2002 Oct 21
5
RFC: Loading packages at startup
I've been kicking the following idea around for a while, and am now
proposing to put some version into 1.7.0. I'd be interested in
comments on the desirability and the design, before I start writing
any code.
S4 introduced a file .S.chapters which can contain a list of S
chapters (equivalent to R packages) to be loaded on start-up. This
was the germ of this proposal.
Proposal:
Extend