similar to: apcluster webinar: Thursday, June 13, 2013, 7:00pm CEST

Dear colleagues, This is to inform you that Version 1.3.0 of the R package apcluster has been released on CRAN yesterday. We did a major extension and overhaul of the package. Most importantly, we added Leveraged Affinity Propagation in fulfillment of multiple users requests. It should now be much easier to cluster large data sets. Apart from this extension, the interfaces to apcluster() and

Dear colleagues, This is to inform you that Version 1.3.1 of the R package apcluster has been released on CRAN. We did a major improvement of heatmap and dendrogram plotting, as well as several minor improvements of the package. For more details, see the following URLs: http://www.bioinf.jku.at/software/apcluster/ http://cran.r-project.org/web/packages/apcluster/index.html Best regards,

[cross-posted to R-devel and bioc-devel] Hi, I am trying to implement a 'sort' method in one of the CRAN packages I am maintaining ('apcluster'). I started with using setMethod("sort", ...) in my package, which worked fine. Since many users of my package are from the bioinformatics field, I want to ensure that my package works smoothly with Bioconductor. The problem

Thanks a lot, I?aki, this is a perfect solution! I already implemented it and it works great. I'll wait for 2 more days before I submit the revised package to CRAN - in order to give others to comment on it. Best regards, Ulrich On 01/22/2018 10:16 AM, I?aki ?car wrote: > Re-sending, since I forgot to include the list, sorry. I'm including > r-package-devel too this time, as it

That might be worth thinking about generally, but it would still be nice to have the base generics pre-defined, so that people are not copy and pasting the definitions everywhere, hoping that they stay consistent. On Wed, Mar 26, 2014 at 6:13 AM, Gabriel Becker <gmbecker@ucdavis.edu>wrote: > Perhaps a patch to R such that generics don't clobber each-other's method > tables

Hi, I just figured out that I accidentally posted my message in HTML, so I am retrying in plain text only. Sorry. I am currently extending one of our CRAN packages and ran into an unexpected problem when checking the source package. I got some warnings in the step "* checking for code/documentation mismatches". I double checked everything and did not see anything that would

On 01/22/2018 08:40 AM, Ulrich Bodenhofer wrote: > Thanks a lot, I?aki, this is a perfect solution! I already implemented > it and it works great. I'll wait for 2 more days before I submit the > revised package to CRAN - in order to give others to comment on it. It's very easy for 'pictures of code' (unevaluated code chunks in vignettes) to drift from the actual

I fully agree, Michael, that this would be a great thing to have! I have often wondered why R and the standard packages are still sticking so much to the old-style S3 flavor though S4 is part of standard R. I acknowledge that backward compatibility is important, but, as far as I got it, redefining a function or S3 generic as an S4 generic should not harm existing functionality (if done

On 03/27/2014 02:13 AM, Ulrich Bodenhofer wrote: > I fully agree, Michael, that this would be a great thing to have! I have > often wondered why R and the standard packages are still sticking so > much to the old-style S3 flavor though S4 is part of standard R. I > acknowledge that backward compatibility is important, but, as far as I > got it, redefining a function or S3 generic as

Re-sending, since I forgot to include the list, sorry. I'm including r-package-devel too this time, as it seems more appropriate for this list. El 22 ene. 2018 10:11, "I?aki ?car" <i.ucar86 at gmail.com> escribi?: > > > El 22 ene. 2018 8:12, "Ulrich Bodenhofer" <bodenhofer at bioinf.jku.at> > escribi?: > > Dear colleagues, dear members of

Dear colleagues, dear members of the R Core Team, This was an issue raised by Prof. Brian Ripley and sent privately to all developers of CRAN packages that suggest Bioconductor packages (see original message below). As mentioned in my message enclosed below, it was easy for me to fix the error in examples (new version not submitted to CRAN yet), but it might turn into a major effort for the

Hi, I am currently extending one of our CRAN packages and ran into an unexpected problem when checking the source package. I got some warnings in the step "* checking for code/documentation mismatches". I double checked everything and did not see anything that would actually justify this warning. After testing around for quite a while, I think I can now pinpoint the problem. In

I will be giving a webinar on glmnet on Friday May 3, 2013 at 10am PDT (pacific daylight time) The one-hour webinar will consist of: - Intro to lasso and elastic net regularization, and coefficient paths - Why is glmnet so efficient and flexible - New features of the latest version of glmnet - Live glmnet demonstration - Question and Answer period To sign up for the webinar, please go to

On 03/27/2014 06:31 PM, Herv? Pag?s wrote: > On 03/27/2014 02:13 AM, Ulrich Bodenhofer wrote: >> [...] >> >> For the time being, it seems I have three options: >> >> 1) not supplying the sort() function yet (it is not yet in the release, >> but only in my internal devel version) >> 2) including a dependency to BiocGenerics >> 3) leaving the

Hi, I was wondering how it was possible to access the actual cluster exemplars from the APResult class. Currently it only spits it out onto the terminal if you type the object but there is no other way to see which one is the examplar. Would appreciate any help. Thanks, Sachin [[alternative HTML version deleted]]

CRAN (and crantastic) updates this week New packages ------------ * apcluster (1.0.1) Ulrich Bodenhofer http://crantastic.org/packages/apcluster The apcluster package implements Frey's and Dueck's Affinity Propagation clustering in R. The algorithms are analogous to the Matlab code published by Frey and Dueck. * BioPhysConnectoR (1.6-1) Franziska Hoffgaard

Greetings - if you're curious about monitoring GlusterFS performance, be sure and sign up for tomorrow's webinar. We will also post the recording online should you not be able to make it. Introducing Gluster for Geeks Technical Webinar Series In this Gluster for Geeks technical webinar, Craig Carl, Senior Systems Engineer, will explain and demonstrate how to monitor your Gluster

?What is an Inflector Window Insulator? http://www.youtube.com/watch?v=21DiKS5mt4k Energy Efficiency Done Right presents information on the In'Flector See Through Radiant Barrier Window and Skylight Insulator and the Energy Efficiency Industry. We will examine the growth of the energy efficiency, conservation, energy independence, and carbon emmission industries and explain

Dear Person That Posted This Email, Please be aware that calls for papers are only on-topic for this email list if they are specifically about LLVM. For example, a call for a workshop on LLVM in Scientific Computing would be on topic whereas a general compiler call for papers (like the one below) is not. That said, I hope you receive many strong submissions. Your conference looks

------------------------------------------------------------------------------------------------ CALL FOR PAPERS 15th International Conference on Managed Languages & Runtimes (ManLang'18) September 10-14, 2018, Linz, Austria http://ssw.jku.at/manlang18/ ------------------------------------------------------------------------------------------------ ManLang (formerly PPPJ) is a