similar to: undefined method 'to_sym' for ["<var>", "<var">]:Array

Hi all, I'm searching for a little clarification on partial mantel tests (ecodist package) I've a distance matrix (x,y), and several others containing environmental/chemical variables. Based on the help file, and the package instructions I've managed to implement the tests as; var1 ~ env1 + space to partial out the effect of space and test the relationship between the

Hi, Currently object.size() is not very useful on environments as it always returns 56 bytes, no matter how big the environment is: env1 <- new.env() object.size(env1) # 56 bytes env2 <- new.env(hash=TRUE, size=75000000L) object.size(env2) # 56 bytes env3 <- list2env(list(a=runif(25000000), L=LETTERS)) object.size(env3) # 56 bytes This makes it pretty useless on

Hello, I'm trying to illustrate the relationships between various trait and environment data gathered from a number of sites. I've created a GAM to do this: gam1=gam(trait~s(env1)+s(env2)+te(env1,env2)) and I know how to create a 3D plot using vis.gam. I want to be able to show points on the 3D plot indicating the sites that the data came from. I can do this on a 2D plot when there is one

Hi Gabe, On 09/29/2015 02:51 PM, Gabriel Becker wrote: > Herve, > > The problem then would be that for A a refClass whose fields take up N > bytes (in the sense that you mean), if we do > > B <- A > > A and B would look like the BOTH take up N bytes, for a total of 2N, > whereas AFAIK R would only be using ~ N + 2*56 bytes, right? Yes, but that's still a *much*

Hello, I''m using the following expression to format a list: $valid_environments = [''env1'', ''env2'', ''env3''] $env_message = $valid_environments.reduce |$message, $env| { "${message}, ${env}" } It works at run-time (Puppet 3.2.4 standalone with "--parser=future"). However in Eclipse (v4.3.1),

I am attempting to move our test puppet installation from looking for node information in a manifest to LDAP. I followed the instructions at: https://reductivelabs.com/trac/puppet/wiki/LdapNodes and was able to get the puppet schema loaded into our LDAP. I can now query LDAP and modify/load data without any issues using the OpenLDAP tools. e.g. ldapsearch -h ldapdev1.domain.com -x

Hi R Users, I created interaction plots in ggplot2 and was trying to add output of two way ANOVA models, especially only interaction ( example treatment*control F(XX, XX) = xxx, p = xxx) into figures, but i was not able to add. Would you mind to help on how I can add information into each figure? I have attached the example data and the code that I used for this. dat<-structure(list(Sites

I am trying to configure puppet with LDAP repository . I have set puppet schema and I have also added node definition at LDAP. Here is my configuration details . ############################################################## Puppet.conf node_terminus = ldap ldapserver = 10.250.11.127 ldapbase = ou=Hosts,dc=xyz,dc=com ldapassword = secret

Seems straight forward enough but I keep getting errors. On a client... err: Could not retrieve catalog from remote server: Error 400 on SERVER: Failed when searching for node ubuntu5.ttinet: LDAP Search failed on the puppet master... puppet.conf [master] # ENC (external node classificiations) node_terminus = ldap ldapnodes = true ldapclassattrs = puppetclass # LDAP ldapserver =

Hi All, I am using canonical correspondence analysis to compare a community composition matrix to a matrix of sample spatial relationships and environmental variables. In order to parse out how much variance is explained purely by space (S/E) or the environment (E/S) I am using a conditional (partial) CCA. I want to test significance via Monte Carlo but I can not find a way to do this with a

Hi, I''ve set up puppet to get node definitions from LDAP as per the docs. It''s been working well, but I now want to use fully qualified domain names instead of simple domain-less hostnames for the node name. I replaced the ou=Hosts entries with equivalent ones using FQDNs, restarted the puppetmasterd, and tried a "puppetd --test" from one of the nodes. However, I

Hi, I''m trying to puppet kick with class option. Pupper Master: puppetmaster.example.com Puppet Client1: host1.example.net Puppet Client2: host2.example.net But I get this error. --- [root@puppetmaster ~]# puppet kick --class test --debug test: host1.example.net.example.com, host2.example.net.example.com Triggering host1.example.net.example.com, host2.example.net.example.com Host

Herve, The problem then would be that for A a refClass whose fields take up N bytes (in the sense that you mean), if we do B <- A A and B would look like the BOTH take up N bytes, for a total of 2N, whereas AFAIK R would only be using ~ N + 2*56 bytes, right? ~G On Tue, Sep 29, 2015 at 2:42 PM, Herv? Pag?s <hpages at fredhutch.org> wrote: > Hi, > > Currently object.size()

Hi. contrary to other environments, the attributes of a *package* environment are dropped (from the new environment) when attach():ing it to the search() path. This might or might not be surprising, but have some side effects if rearranging/attaching package environments. # Example - Regular environments env <- new.env() attr(env, "foo") <- "bar" print(env) ##

Hello, Running into a problem when wanting to daemon-ize the agent. It doesnt seems to do anything: - cannot find any daemon process with (ps aux | grep puppet) - the config is not updated after editing some params on the master - /var/log/puppet stay empty... while, when logged as root, it is working without issue with $puppet agent --test. ##Conf Ubuntu 12.04 Puppet 2.7.11 ## Daemon is

Dear list, I have a problem with nested functions and I don't manage to get it solved. I know I should be looking in environments, and I have tried a lot, but it keeps on erroring. An easy version of the problem is as follows: innerfunction<-function() { print(paste(a, " from inner function")) print(paste(b, " from inner function")) setwd(wd) }

I have a stock gentoo rails install. I get something like this when I try to use script/generate, rake migrate or script/console and probably others. 0 wicked www/sharkwatch % ./script/console Loading development environment. /usr/lib/ruby/gems/1.8/gems/activesupport-1.3.1/lib/active_support/core_ext/hash/keys.rb:27:in `symbolize_keys'':NoMethodError: undefined method `to_sym''

Hi. I'm trying to perform what should be a reasonably basic analysis of some spatial presence/absence data but am somewhat overwhelmed by the options available and could do with a helpful pointer. My researches so far indicate that if my data were normal, I would simply use gls() (in nlme) and one of the various corSpatial functions (eg. corSpher() to be analagous to similar analysis in SAS)

Dear R developers, I've run into a weird behavior of the numericDeriv function (from the stats package) which I also posted on StackOverflow (question has same title as this email, except for the version of R). Running the code bellow we can see that the numericDeriv function gives an error as the derivative of x^a wrt a is x^a * log(x) and log is not defined for negative numbers. However,

Dear all As far as I could trace, looking at the function C function numeric_deriv, this unwanted behavior comes from the inner most loop in, at the very end of the function, for(i = 0, start = 0; i < LENGTH(theta); i++) { for(j = 0; j < LENGTH(VECTOR_ELT(pars, i)); j++, start += LENGTH(ans)) { SEXP ans_del; double origPar, xx, delta; origPar = REAL(VECTOR_ELT(pars, i))[j];