similar to: htmlParse (from XML library) working sporadically in the same code

Hi, I found an architecture-specific segfault problem with the XML package. I originally found the problem using the parseKGML2Graph function in the Bioconductor KEGGgraph package, but as far as I can tell the underlying issue seems to be with the xmlTreeParse which is called by parseKGML2Graph. I'm trying this piece of code, from the xmlTreeParse help page: library(XML) fileName <-

Hello, I'm trying to install KEGGSOAP with bioconductor but i'm facing this problem: /> biocLite("KEGGSOAP") BioC_mirror: http://bioconductor.org Using R version 2.15, BiocInstaller version 1.4.4. Installing package(s) 'KEGGSOAP' trying URL 'http://www.bioconductor.org/packages/2.10/bioc/src/contrib/KEGGSOAP_1.30.0.tar.gz' Content type

Hi RUsers, Suppose I want to see the data on the website url <- "http://www.nseindia.com/content/indices/ind_histvalues.htm" for the index "S&P CNX NIFTY" for dates "FromDate"="01-11-2010","ToDate"="02-11-2010" then read the html table from the page using readHTMLtable() I am using this code webpage <-

Hi, beginner to R and was having some problems scraping data from tables in html using the XML package. I have included some code below. I am trying to loop through a series of html pages, each of which contains a single table from which I want to scrape data. However, some of the pages are blank - and so it throws me an error message when it gets to htmlParse(). The loop then closes out and I

I am trying to parse a webpage using the htmlParse command in XML package as follows: library(XML) u = "http://en.wikipedia.org/wiki/World_population" doc = htmlParse(u) I get the following error: Error in htmlParse(u) : error in creating parser for http://en.wikipedia.org/wiki/World_population I am using a R 2.13.1 (32 bit version) on a 64 bit Windows. (I tried installing it in

Hi I am using Version R 2.15 and I haven't been able read html table. Following is my code and error message. Error in htmlParse(doc) : error in creating parser for http://en.wikipedia.org/wiki/Brazil_national_football_team theurl <- "http://en.wikipedia.org/wiki/Brazil_national_football_team" tables <- readHTMLTable(theurl) Regards, Kiung [[alternative HTML version

Hello dear R-help mailing list. I wish to be able to have htmlParse work well with Hebrew, but it keeps to scramble the Hebrew text in pages I feed into it. For example: # why can't I parse the Hebrew correctly? library(RCurl) library(XML) u = "http://humus101.com/?p=2737" a = getURL(u) a # Here - the hebrew is fine. a2 <- htmlParse(a) a2 # Here it is a mess... None of

Hello dear R-help mailing list. Looks like the same issue in Russian: library(RCurl) library(XML) u = " http://www.cian.ru/cat.php?deal_type=2&obl_id=1&room1=1" a = getURL(u) a # Here - the Russian is fine. a2 <- htmlParse(a) a2 # Here it is a mess... None of these seem to fix it: htmlParse(a, encoding = "windows-1251") htmlParse(a, encoding =

Hi, I am using XML::readHTMLTable and getting the below error. Does anyone know why? Does this function not work with https? I didn't see anything in help about that. > library(XML) > wampage<-readHTMLTable('https://hr-workforce-analytics.llnl.gov/wf_pi_pop.html',1) Error in htmlParse(doc) : File https://hr-workforce-analytics.llnl.gov/wf_pi_pop.html does not exist Dan

Hi, I can't get the colClasses option to work in the readHTMLTable function of the XML package. Here's a code fragment: require("XML") doc <- "http://www.nber.org/cycles/cyclesmain.html" table <- getNodeSet(htmlParse(doc),"//table") [[2]] # The main table is the second one because it's embedded in the page table. xt

Dear colleagues, each time I use htmlParse, R crashes or hangs. The url I'd like to parse is included below as is the results of a series of basic commands that describe what I'm experiencing. The results of sessionInfo() are attached at the bottom of the message. The thing is, htmlTreeParse appears to work just fine, although it doesn't appear to contain the information I need (the

To get USDCAD rates from Bank of Canada, we first go url <- "http://banqueducanada.ca/en/rates/exchange-avg.html" select 12 months for Rates for the past and click "Get Rates" button. Then the page moves to address <- "http://banqueducanada.ca/cgi-bin/famecgi_fdps" and the rates show in the html page. htmlParse() can read the html document but

Hi, I am trying to access a website and read its content. The website is a restricted access website that I access through a proxy server (which therefore requires me to enable cookies). I have problems in allowing Rcurl to receive and send cookies. The following lines give me: library(RCurl) library(XML) url <- "http://www.theurl.com" content <- readHTMLTable(url) content

Here is my code. there are three method to get text to be parded by htmlParse function. 1.file on mycomputer options(encoding="gbk") library(XML) xmltext1 <- htmlParse("/home/tiger/Desktop/27174.htm" ) #/home/tiger/Desktop/27174.htm is the file of http://www.jb51.net/article/27174.htm downloaded on my computer. 2.url options(encoding="gbk")

Hi R Users, I want to get the data from the url given from 10/09/2012 to 15/10/2012. I don't know how to pass the parameters . ....................................................................................................................................... library(RHTMLForms) > > ff = getHTMLFormDescription("

I'm trying to scrape football projections from accuscore.com for the different positions (right now the projections are set to zeros, but that will change). I can get the QB projections, but I can't get the projections for any of the other positions (e.g., RB). How can I get the RB projections? I'm not sure what the actual website for the RB and other projections is. When I go to

library(XML) download.file('http://polya.umdnj.edu/polya_db2/gene.php?llid=109079&unigene=&submit=Submit','index.html') tables=readHTMLTable("index.html",error=function(...){}) tables readHTMLTable gives me the following errors. Could somebody let me know how to suppress them? Opening and ending tag mismatch: center and table htmlParseEntityRef: expecting

Hello, I was wondering if there is a function in R that imports tables directly from a HTML document. I know there are functions (say, getURL() from {RCurl} ) that download the entire page source, but here I refer to something like google document's function importHTML() (if you don't know this function, go check it, it's very useful). Anyway, if someone of something that does this

Hello All, I am trying to write a routine that loops over some links and parses those links using htmlParse.  The problem is that one of the links may display a pop up window on top of that link's web page.  If there is a pop up, the routine bombs and I get an error message that the url doesn't exist. Does the XML package (or perhaps another package) provide a way to deal with this

Hi all: I struggle a lot scraping web data. I still haven't got a handle on the XML package. I'd like to get particular exchange rates from this table: https://raw.github.com/currencybot/open-exchange-rates/master/latest.json This is the code that I'm working with: library(RCurl) library(XML)